Citeseq celltypes #69
Closed
Conversation
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
…ataset - minor fixing on CITEseq coord blood to avoid error in case of empty colData assignment
- ontology ids need to be identified
|
There was a conflict that has been resolved by adding the new code in the |
LiNk-NY
approved these changes
May 23, 2023
| @@ -40,6 +40,7 @@ mouse_visual_cortex,seqFISH_Coordinates.rda,SingleCellMultiModal/mouse_visual_co | |||
| mouse_visual_cortex,seqFISH_Counts.rda,SingleCellMultiModal/mouse_visual_cortex/v2.0.0/seqFISH_Counts.rda,Rda,matrix,Dario Righelli <dario.righelli@gmail.com>,"Dept. of Molecular Genetics, Allen Institute for Brain Science, United States",NA,10090,Mus musculus,2.0.0,https://www.dropbox.com/sh/avj4nrd4la5i88u/AACafWwBbE-xsLvOGDwRZDpYa?dl=0,TXT,NA,3.12,seqFISH_Counts data specific to the MOUSE_VISUAL_CORTEX project,seqFISH_Counts | |||
| mouse_visual_cortex,seqFISH_Labels.rda,SingleCellMultiModal/mouse_visual_cortex/v2.0.0/seqFISH_Labels.rda,Rda,data.frame,Dario Righelli <dario.righelli@gmail.com>,"Dept. of Molecular Genetics, Allen Institute for Brain Science, United States",NA,10090,Mus musculus,2.0.0,https://www.dropbox.com/sh/avj4nrd4la5i88u/AACafWwBbE-xsLvOGDwRZDpYa?dl=0,TXT,NA,3.12,seqFISH_Labels data specific to the MOUSE_VISUAL_CORTEX project,seqFISH_Labels | |||
| cord_blood,scADT_Counts.rda,SingleCellMultiModal/cord_blood/v1.0.0/scADT_Counts.rda,Rda,matrix,Dario Righelli <dario.righelli@gmail.com>,"Innovation Lab, New York Genome Center, New York, United States",NA,9606,Homo sapiens,1.0.0,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE100866,TXT,NA,3.12,scADT_Counts data specific to the CORD_BLOOD project,scADT_Counts | |||
| cord_blood,scADT_clrCounts.rda,SingleCellMultiModal/cord_blood/v1.0.0/scADT_clrCounts.rda,Rda,matrix,Dario Righelli <dario.righelli@gmail.com>,"Innovation Lab, New York Genome Center, New York, United States",NA,9606,Homo sapiens,1.0.0,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE100866,TXT,NA,3.12,scADT_clrCounts data specific to the CORD_BLOOD project,scADT_clrCounts | |||
There was a problem hiding this comment.
(for future reference) please add to the bottom of the file
|
Please try to avoid merge commits with devel and instead checkout from |
|
Merged with rebase to clean up the merge commit. Thanks! |
|
@drighelli I have updated this. |
|
ok, sorry for the errors! |
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
adding code, metadata, script, new functions and ontomap for the cord_blood identified celltypes.