isolab for Galaxy

This is Galaxy tool for R package IsotopicLabelling which analyses mass spectrometric isotopic patterns obtained following isotopic labelling experiments. For more details, see the IsotopicLabelling: an R package for the analysis of MS isotopic patterns of labelled analytes.

Installation

• Install Galaxy under Linux.

• Use git to clone this tool

  git clone https://github.com/wanchanglin/isolab.git

• Add this tool's location into Galaxy' tool config file: ~/Galaxy/config/tool_conf.xml. For example, one simplified tool_conf.xml looks like:

  <?xml version='1.0' encoding='utf-8'?>
  <toolbox monitor="true">
    
    <section id="getext" name="Get Data">
      <tool file="data_source/upload.xml" />
    </section>
    
    <section id="MyTools" name="My Tools">
      <tool file="/path/to/isolab/isolab.xml" />
    </section>
  
  </toolbox>

• Some test data are located in test-data.

Authors, contributors & contacts

• Wanchang Lin (wl361@cam.ac.uk), University of Cambridge
• Julian L Griffin (jlg40@cam.ac.uk), University of Cambridge