Skip to content

Commit

Permalink
Update README.md
Browse files Browse the repository at this point in the history
  • Loading branch information
wiheto authored Mar 20, 2023
1 parent 51d2f37 commit 0a9ec9e
Showing 1 changed file with 5 additions and 3 deletions.
8 changes: 5 additions & 3 deletions README.md
Original file line number Diff line number Diff line change
Expand Up @@ -10,6 +10,8 @@ Painlessly plot networks on a brain in python. The package is still in early dev

[See homepage for more details, examples, documentation](https://wiheto.github.io/netplotbrain/)

[See Network Neuroscience paper for a general turorial](https://doi.org/10.1162/netn_a_00313)

![](https://raw.githubusercontent.com/wiheto/netplotbrain/main/examples/figures/showcase.png)

## Note
Expand Down Expand Up @@ -44,22 +46,22 @@ Suggestion of text in methods section:

>### Methods
>
>Network plots were generated using netplotbrain (Thompson & Fanton 2021), which utilizes templateflow (Ciric et al 2021), matplotlib (Hunter 2007), pandas (McKinney 2011), numpy (Harris et al 2020), scipy (Virtanen et al 2020), nibabel (Brett et al 2020), and scikit-image (van der Walt et al 2014).
>Network plots were generated using netplotbrain (Fanton & Thompson 2023), which utilizes templateflow (Ciric et al 2021), matplotlib (Hunter 2007), pandas (McKinney 2011), numpy (Harris et al 2020), scipy (Virtanen et al 2020), nibabel (Brett et al 2020), and scikit-image (van der Walt et al 2014).
>
>### References
>
>Brett, Matthew, Markiewicz, Christopher J., Hanke, Michael, Côté, Marc-Alexandre, Cipollini, Ben, McCarthy, Paul, et al (2020, November 28). nipy/nibabel: 3.2.1 (Version 3.2.1). Zenodo. http://doi.org/10.5281/zenodo.4295521
>
>Ciric, R., Lorenz, R., Thompson, W. H., Goncalves, M., MacNicol, E., Markiewicz, C., ... & Esteban, O. (2021). TemplateFlow: a community archive of imaging templates and atlases for improved consistency in neuroimaging. bioRxiv.
>
>Fanton, S., & Thompson, W. H. NetPlotBrain: A Python package for visualising networks and brains. Network Neuroscience, 1-21.
>
>Harris, C. R., Millman, K. J., van der Walt, S. J., Gommers, R., Virtanen, P., Cournapeau, D., ... & Oliphant, T. E. (2020). Array programming with NumPy. Nature, 585(7825), 357-362.
>
>Hunter, J. D. (2007). Matplotlib: A 2D graphics environment. IEEE Annals of the History of Computing, 9(03), 90-95.
>
>McKinney, W. (2011). pandas: a foundational Python library for data analysis and statistics. Python for High Performance and Scientific Computing, 14(9), 1-9.
>
>Thompson WH, & Fanton S. (2021, 10 March). wiheto/netplotbrain:. Zenodo. doi :10.5281/zenodo.4593837
>
>Van der Walt, S., Schönberger, J. L., Nunez-Iglesias, J., Boulogne, F., Warner, J. D., Yager, N., ... & Yu, T. (2014). scikit-image: image processing in Python. PeerJ, 2, e453.
>
>Virtanen, P., Gommers, R., Oliphant, T. E., Haberland, M., Reddy, T., Cournapeau, D., ... & van Mulbregt, P. (2020). SciPy 1.0: fundamental algorithms for scientific computing in Python. Nature methods, 17(3), 261-272.

0 comments on commit 0a9ec9e

Please sign in to comment.