All codes in "The evolution history of an allotetraploid mangrove tree analysed with a new tool Allo4D".
1. Development and testing of Allo4D
All codes were uploaded to the https://github.com/yuanw-18/Allo4D.
2. Division of the B. racemosa subgenome
We used the Allo4D pipeline to divide subgenomes of B. racemosa.
3. Evolutionary history of B. racemosa
All codes in evolution.script.
4. Genome reconstruction in B. racemosa
All codes in genomeReconstrct.script.
5. Expansion of GSLs related genes in B. racemosa
All codes in GSL.script.