COMODELS

Models for COVID - 19

For documentation, see the docstrings! Much more to come. For help:

import comodels

help(comodels)
help(comodels.PennDeath)
help(comodels.Penn)

Penn Death model

# import the penn model
import matplotlib.pyplot as plt
from comodels import PennDeath

help(PennDeath)
tx = PennDeath(N=28304596, I=223, R=0, D=3, D_today=2)

help(PennDeath.sir)


def plot_penn(Pdp: PennDeath, n_days: int) -> None:
    # predict the coming storm and plot it
    curve, admissions = Pdp.sir(n_days)
    fig, ax = plt.subplots(1, 3, figsize=(15, 5))
    for k, v in curve.items():
        if k not in Pdp.rates.keys():
            ax[0].plot(v, label=k)
            ax[0].legend()
        else:
            ax[1].plot(v, label=k)
            ax[1].legend()
    ax[1].set_title("Hospital Resource Usage")
    ax[0].set_title("SIR curve")
    for k, v in admissions.items():
        ax[2].plot(v, label=k)
        ax[2].legend()
    ax[2].set_title("Additional Resource Usage by day")
    fig.suptitle(f"No social distancing, total deaths = {int(max(curve['dead']))}")
    plt.show()


plot_penn(tx, 120)
print(curve.keys())
print(occupancy.keys())