update #24
Merged
update #24
Conversation
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
* correct PEP calculation in Bayesian quant * add comments. change the prior to something theoretically sound
* LFQ CamelCase, Change Top3 protein quant from peak-based to peptide-based * Remove Silac protein accession to alleviate downstream parsimony * Add functionality to skip protein quant * Revert "Add functionality to skip protein quant" This reverts commit bb847e7.
* MBR update (false discovery rate implementation+bugfixes) * fix rare bug; edit unit test * small scoring change * new mbr unit test * code quality. include normalization in big MBR unit test * comment out unused code * fix a bug if mod sequences have different mono masses (silac) and requireMonoisotopicMass is turned off * merge conflicts * mbr update. better scoring. removed FDR stuff for now. * remove outdated unit tests, add assertions to new MBR unit test * comments
* isotope pattern recognition changes * delete unused stuff * fix a bug in chemical formula * fix bug in peak ppm error * changed some correlation stuff. edit/add to unit tests
* small flashLFQ changes * fix parameter * add unit tests * change some peptide ToString stuff * order protein groups for ToString output
* moving seq var methods to mzLib * change to requiring crossing identifying sequence * cleanup * changes for stop gain/loss revisions to snpeff * update nunit3 * rename includes * more tests
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
No description provided.