A simple script to transform PHIDRA pfam_validated_report.tsv domain annotations into a color-coded mapping file for tree visualization.

Features

• Reads a TSV of Pfam hits per query
• Calculates bar heights = |Env_Starts - Env_Ends| for each Pfam
• Assigns each unique Pfam a hex color.
• Outputs a TSV with one row per query used as a mapping file upload in Iroki

Requirements

• Python 3.6+
• pandas
• seaborn
• matplotlib

Usage

python phidra_domain_to_tree_map.py <input.tsv> <output.tsv>

Authors

Contributors names and contact info.

zschreib@udel.edu

Acknowledgments

Tree visuals provided by Iroki