You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
Plotting Mode: Native, high-quality visualization engine that generates publication-ready stacked bar charts. It features greedy maximum-overlap cluster alignment across runs to keep colors consistent, and supports up to three hierarchical tiers of population label brackets alongside custom color palettes.
Shared SVD for Fast Multi-K Sweeps: Significantly accelerated parameter sweeps across ranges of $K$ by computing and reusing a single randomized SVD initialization once, avoiding redundant calculations and heavily boosting training speeds.
Cross-Validation: Built-in v-fold cross-validation (--cv) that automatically masks genotype entries and measures prediction error, providing a mathematical and robust way to identify the optimal number of ancestral clusters.
Supervised Mode: Enables reference-guided clustering by clamping the ancestry proportions ($Q$) of known reference samples, anchoring the allele-frequency model ($P$) to direct genetic backgrounds while estimating the remaining samples freely.
Projection Mode: Allows rapid ancestry inference ($Q$-only optimization) for new target datasets against pre-trained, fixed reference panels ($P$) without the need to retrain or modify the baseline model.