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Changes to docs to account for RNA-seq sample compendia #115

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merged 4 commits into from
Sep 26, 2019

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jaclyn-taroni
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Closes #109 and #114

  • Adds a section about RNA-seq sample compendia and reorganizes the species compendia section accordingly
  • Updates the getting started section to read as normalized compendia

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@cgreene cgreene left a comment

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A couple minor things - see what you think. I approve and feel free to merge when you are comfortable.

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Co-Authored-By: Casey Greene <cgreene@users.noreply.github.com>
@@ -408,8 +408,13 @@ Currently, we only support skipping quantile normalization for RNA-seq experimen

We periodically release compendia comprised of all the samples from a species that we were able to process.
We refer to these as **species compendia**.
We offer two kinds of species compendia: [normalized compendia](#normalized-compendia) and [RNA-seq sample compendia](#rna-seq-sample-compendia).
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we refer to them as refine.bio compendia now?

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@dvenprasad dvenprasad left a comment

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Looks good apart from that one comment. I'm okay with either species compendia or refine.bio compendia, just need to know if I need change it on the new designs.

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Seems easier to change here. I will also change the section header.

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Updated normalized compendia pipeline

docs-notmalized-compendia

@jaclyn-taroni jaclyn-taroni merged commit 6cb8748 into master Sep 26, 2019
@jaclyn-taroni jaclyn-taroni deleted the jaclyn-taroni/109-and-114 branch September 26, 2019 14:42
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Add brief information on quantpendia
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