Repository navigation
Release to accompany the Afanc paper.
Key changes:
- Bayesian lineage classified instead of the canonical SNP implementation.
- Adds Bayesian lineage classification to the screen workflow when matching profile models are available.
- Adds a standalone afanc classify module for classifying existing VCFs or Ardal-style allele JSON payloads.
- Adds an autodatabase assembly manifest workbook describing provided assemblies, taxa, tax IDs, inclusion/rejection status, QC outcomes, and Mash metrics.
- Tidied up the output report.