Bioinformatics-pipelines
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bamToFreq
bamToFreq PublicForked from matdoering/bamToFreq
Converts mapped next-generation sequencing reads in BAM format to the tabular frequency file format that is used by geno2pheno[ngs-freq]
Shell
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fastqToFreq
fastqToFreq PublicForked from matdoering/fastqToFreq
Uses MinVar and bamToFreq to transform NGS reads (FASTQ) to frequency files (CSV)
Python
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MinVar
MinVar PublicForked from medvir/MinVar
A tool to detect minority variants in HIV-1 and HCV populations
Python
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variant-calling
variant-calling PublicForked from medvir/variant-calling
computes all variants including indels from Illumina sequences compared to a reference sequence
Python
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Urinary-metabolomic-phenotyping-for-Alzheimer-pathology
Urinary-metabolomic-phenotyping-for-Alzheimer-pathology PublicForked from natacourby/Urinary-metabolomic-phenotyping-for-Alzheimer-pathology
R
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Repositories
- Truffle Public Forked from euxhenh/Truffle
Trajectory Inference of clinical data via Multi-commodity Flow
Bioinformatics-pipelines/Truffle’s past year of commit activity - BRRP-GED Public Forked from vvrahul11/BRRP-GED
Breast cancer recurrence prognosis using gene expression data
Bioinformatics-pipelines/BRRP-GED’s past year of commit activity - bcbio-nextgen Public Forked from bcbio/bcbio-nextgen
Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis
Bioinformatics-pipelines/bcbio-nextgen’s past year of commit activity - awesome-single-cell Public Forked from spriyansh/awesome-single-cell
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
Bioinformatics-pipelines/awesome-single-cell’s past year of commit activity - covid_metabolism Public Forked from ruppinlab/covid_metabolism
Metabolic modeling of SARS-CoV-2 infection and antiviral target prediction
Bioinformatics-pipelines/covid_metabolism’s past year of commit activity - Omicsfold Public Forked from AstraZeneca/Omicsfold
Multi-omics data normalisation, model fitting and visualisation.
Bioinformatics-pipelines/Omicsfold’s past year of commit activity - zoonotic_rank Public Forked from Nardus/zoonotic_rank
Code and data used in Mollentze et al. (2021) "Identifying and prioritizing potential human-infecting viruses from their genome sequences".
Bioinformatics-pipelines/zoonotic_rank’s past year of commit activity - single-cell-tutorial Public Forked from theislab/single-cell-tutorial
Single cell current best practices tutorial case study for the paper:Luecken and Theis, "Current best practices in single-cell RNA-seq analysis: a tutorial"
Bioinformatics-pipelines/single-cell-tutorial’s past year of commit activity
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