Remove deprecations #1026
Remove deprecations #1026
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eleftherioszisis
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@mgeplf I think the only thing left here is to decide if I should remove the viewer module. I am hesitant because the old way was more intuitive for the users compared to using the backend modules directly. |
Yeah, I think I agree about intuitive-ness. |
ok, so let's not include the viewer related stuff in this PR and I will open a follow up one for the viewer. How about that? I will take a look at the viewer module and check if we can have a unified api with multiple backends. I am afraid that it might not be trivial given that it has not been done already. |
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Sounds good.
Likely; just give it a short thought and let me know what you come up with. |
Remove deprecated modules and deprecation warning. viewer module was not included to be treated separately
* Mixed subtree processing (#981) * Refactor tests for test_mixed.py (#1027) * Remove deprecated modules and functions/classes & warnings (#1026, #1032) * Use readonly morphio Morphology by default (#979) * Morphology level radial distance features use the soma as reference point (#1030) * Expose subtree processing from the morph_stats api (#1034) * Remove pyXX prefix for lint, docs, and coverage (#1038) * Fix tutorials and add tutorial testenv (#1039) * Add isort for formatting/linting (#1040) * Add testing of example scripts (#1041) * Make documentation/docstrings testable (#1035) * Add black to neurom, format everything, and add to lint (#1042) * Fix load_morpholgies to always resolve paths (#1047) * allow Morphology objects to be either mut or immut (#1049) * Replace iter_* methods by properties in core objects and improve iter_segments (#1054) * Decouple Morphology constructor from io (#1120) * Move soma methods to functions (#1118)
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