Refactor mixed subtree tests #1027
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eleftherioszisis
commented
Apr 26, 2022
eleftherioszisis
commented
- Move all neurite tests to morphology tests because they are applied on the entire morphology not per neurite
- Add per neurite tests that are re-defined in the neurite level, which indicates that they differ from the morphology level ones
mgeplf
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Apr 27, 2022
eleftherioszisis
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Jun 7, 2022
eleftherioszisis
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May 14, 2024
* Mixed subtree processing (#981) * Refactor tests for test_mixed.py (#1027) * Remove deprecated modules and functions/classes & warnings (#1026, #1032) * Use readonly morphio Morphology by default (#979) * Morphology level radial distance features use the soma as reference point (#1030) * Expose subtree processing from the morph_stats api (#1034) * Remove pyXX prefix for lint, docs, and coverage (#1038) * Fix tutorials and add tutorial testenv (#1039) * Add isort for formatting/linting (#1040) * Add testing of example scripts (#1041) * Make documentation/docstrings testable (#1035) * Add black to neurom, format everything, and add to lint (#1042) * Fix load_morpholgies to always resolve paths (#1047) * allow Morphology objects to be either mut or immut (#1049) * Replace iter_* methods by properties in core objects and improve iter_segments (#1054) * Decouple Morphology constructor from io (#1120) * Move soma methods to functions (#1118)
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