non-coding-NGS

Tools for extraction of alleles from Complete Genomics NGS data files.

Tools for rendering those alleles in a format suitable for SInBaD:

Name		Name	Last commit message	Last commit date
Latest commit History 67 Commits
doc		doc
genes_with_novel_var		genes_with_novel_var
igv_snapshots		igv_snapshots
plots		plots
psmc		psmc
.gitignore		.gitignore
LICENSE		LICENSE
README.md		README.md
coding_sizes.py		coding_sizes.py
extract_bed.py		extract_bed.py
extract_indel.sh		extract_indel.sh
extract_snps.sh		extract_snps.sh
extrae_alelos_indel.sh		extrae_alelos_indel.sh
extrae_alelos_snp.sh		extrae_alelos_snp.sh
intersecta_alelos.py		intersecta_alelos.py
intra_region_indel.py		intra_region_indel.py
intra_region_snp.py		intra_region_snp.py
non_coding.sh		non_coding.sh
non_coding_map.py		non_coding_map.py
paired_intra_linguistc_group.py		paired_intra_linguistc_group.py
paired_linguistic_group_jaccard_indexes.py		paired_linguistic_group_jaccard_indexes.py
pares_indel.py		pares_indel.py
pares_snp.py		pares_snp.py
region_ratios.csv		region_ratios.csv
region_ratios.tsv		region_ratios.tsv
regiones_admixed_indel.py		regiones_admixed_indel.py
regiones_admixed_snp.py		regiones_admixed_snp.py
regiones_indel.py		regiones_indel.py
regiones_snp.py		regiones_snp.py
sample_code_file_maps.py		sample_code_file_maps.py
sinbad2circos.sh		sinbad2circos.sh
venn3_utils.py		venn3_utils.py

CSB-IG/non-coding-NGS