parser --> parse. oops.

Author: j-c-c

src/aspire/image/image.py

@@ -516,7 +516,7 @@ def backproject(self, rot_matrices, symmetry_group=None):
         ), "Number of rotation matrices must match the number of images"
 
         # Get symmetry rotations from SymmetryGroup.
-        symmetry_rots = SymmetryGroup.parser(symmetry_group, dtype=self.dtype).matrices
+        symmetry_rots = SymmetryGroup.parse(symmetry_group, dtype=self.dtype).matrices
 
         # Compute Fourier transform of images.
         im_f = xp.asnumpy(fft.centered_fft2(xp.asarray(self._data))) / (L**2)

src/aspire/source/image.py

@@ -256,7 +256,7 @@ def symmetry_group(self, value):
                 f"This source is no longer mutable. Try new_source = source.update(symmetry_group='{value}')."
             )
 
-        self._symmetry_group = SymmetryGroup.parser(value, dtype=self.dtype)
+        self._symmetry_group = SymmetryGroup.parse(value, dtype=self.dtype)
         self.set_metadata(["_rlnSymmetryGroup"], str(self.symmetry_group))
 
     def _populate_symmetry_group(self, symmetry_group):
@@ -270,7 +270,7 @@ def _populate_symmetry_group(self, symmetry_group):
                     f"Overriding metadata with supplied symmetry group {symmetry_group}"
                 )
             else:
-                symmetry_group = SymmetryGroup.parser(
+                symmetry_group = SymmetryGroup.parse(
                     symmetry=self.get_metadata(["_rlnSymmetryGroup"])[0],
                     dtype=self.dtype,
                 )

src/aspire/volume/symmetry_groups.py

@@ -46,7 +46,7 @@ def __str__(self):
         return f"{self.to_string}"
 
     @staticmethod
-    def parser(symmetry, dtype):
+    def parse(symmetry, dtype):
         """
         Takes a SymmetryGroup instance or a string, ie. 'C1', 'C7', 'D3', 'T', 'O', and returns a concrete
         SymmetryGroup object with the specified dtype.

src/aspire/volume/volume.py

@@ -171,7 +171,7 @@ def _set_symmetry_group(self, value):
 
         :param value: A `SymmetryGroup` instance or string indicating symmetry, ie. "C5", "D7", "T", etc.
         """
-        self._symmetry_group = SymmetryGroup.parser(value, dtype=self.dtype)
+        self._symmetry_group = SymmetryGroup.parse(value, dtype=self.dtype)
 
     def _symmetry_group_warning(self, stacklevel):
         """

tests/test_symmetry_groups.py

@@ -81,13 +81,13 @@ def test_group_rotations(group_fixture):
 
 
 def test_parser_identity():
-    result = SymmetryGroup.parser("C1", dtype=np.float32)
+    result = SymmetryGroup.parse("C1", dtype=np.float32)
     assert isinstance(result, IdentitySymmetryGroup)
 
 
 def test_parser_with_group(group_fixture):
     """Test SymmetryGroup instance are parsed correctly."""
-    result = SymmetryGroup.parser(group_fixture, group_fixture.dtype)
+    result = SymmetryGroup.parse(group_fixture, group_fixture.dtype)
     assert result == group_fixture
     assert result.dtype == group_fixture.dtype
 
@@ -100,7 +100,7 @@ def test_parser_dtype_casting(group_fixture, caplog):
 
     caplog.clear()
     msg = f"Recasting SymmetryGroup with dtype {dtype}."
-    _ = SymmetryGroup.parser(group_fixture, dtype)
+    _ = SymmetryGroup.parse(group_fixture, dtype)
     assert msg in caplog.text
 
 
@@ -109,4 +109,4 @@ def test_parser_error():
     with pytest.raises(
         ValueError, match=f"Symmetry type {junk_symmetry[0]} not supported.*"
     ):
-        _ = SymmetryGroup.parser(junk_symmetry, dtype=np.float32)
+        _ = SymmetryGroup.parse(junk_symmetry, dtype=np.float32)