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setup.sh (identical in all three repositories) asks for your agents once, from a table of 20, and uses that answer for every picked skill (installed or not) and for the MCP server.
The local MCP server is added through add-mcp (tool calls are never auto-approved), and each agent's settings file is printed. Devin goes through devin mcp add; other agents get a snippet to paste. Codex goes into the folder when you choose the folder.
When you choose the folder, each agent that keeps MCP servers only for the whole user account (Windsurf, Cline, Goose, Antigravity, Claude Desktop) is asked y/n. With --yes those agents are skipped, and their commands are listed on the last screen.
A --yes re-run never replaces an existing edgeconnect MCP entry unless you also pass --mcp stdio.
The last screen shows how to fill in .env for what you picked.
Fixes the 1.2.7 claim that Codex keeps MCP servers only for the user.