Honeychrome (beta) v0.6.1

Honeychrome v0.6.1 Release Notes

This release contains several new features and improvements, usability improvements and many bug fixes.

Features and improvements

• Cytometry plots now make better use of colourmap range: firstly, there is less blue, more of the higher colours. Secondly, the inside and edges of the 2D histograms are scaled independently.
• There is now a hotspot matrix viewer added to the Spectral Process tab, following Mage et al.
• A "density cutoff" setting has been added to App Configuration, which is the lowest number of events per bin to show a colour in the 2D histograms. Set to 0 to ignore the cutoff.
• There is a new statistical comparison: samples can be compared by histogram overlays.

Usability

• Now user must click to select cell of spillover matrix / nxn plots before rolling scroll wheel. Stops the accidental changing of spillover by using the scroll wheel.
• There is a new status message on window reload to invite user to load sample.
• Improved scrolling - cytometry plots now ignore mouse wheel.
• Improved import flow: user can either place FCS files in experiment folder or link to existing folder.
• Click to open file dialogs in experiment settings.
• Tooltips on heatmap horizontal headers to avoid problem with clipped names.
• Scrolling on spectral model editor no longer messes up selection.

Bug fixes

• fixed issues with import of bigfoot and fcmpass files.
• fixed log ticks bug
• fix to the ephemeral data (raw_transforms) bug
• fixed app config load colormap bug
• numerous further bug fixes