bulkdeconv 0.1.0

Initial release of bulkdeconv for human and mouse tumor bulk RNA-seq.

• A single interface for 18 methods. The 15 implementations included in the package can run after installation.
• EPIC, dcq, and SSMD use their upstream packages and have a separate installation step.
• Results include cell-type scores, method metadata, and quality-control information. Score interpretation depends on the method.
• R CMD check passed on Windows, Ubuntu, and macOS. The checks for the three external methods require additional packages and were run separately on Windows.

Install from the release tag in R:

install.packages(c("remotes", "BiocManager"))
remotes::install_github("DaikiKumakura/bulkdeconv@v0.1.0", repos = BiocManager::repositories())

See the README for input formats, examples, and method-specific requirements.