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BenjaminMidtvedt and others added 30 commits July 26, 2022 13:53
Use MultiHeadSelfAttention and MultiHeadGatedSelfAttention if want to return the attention weights
This commit adds new message-passing graph layers (MPN) and graph convolutional layers to dt, including vanilla MPN, GRUMPN, Masked-attention FGNN, and GraphTransformer.
Fix indexing problems related to tf.gather
Allow multi-inputs in ContinuousGenerator
Fix phase correction at focus and offset calculation
giovannivolpe and others added 26 commits September 22, 2022 06:38
* Update layers.py

* Update convolutional.py

Transformer-based models can now be reused and expanded quickly and easily

* Update documentation

* Update Transformer-based models

* Delete classifying_MNIST_vit_tutorial.ipynb

* Create classifying_MNIST_vit_tutorial.ipynb

* Update datasets.py

* Allows kwargs as inputs in single_layer_call

* Update embeddings.py

* masked transformers

* reformat transformer models

* Create trajectory_analysis_tutorial.ipynb

* Add Variational autoencoders

* Add variational autoencoders

* Update vae.py

* Create MNIST_VAE_tutorial.ipynb

* Update MNIST_VAE_tutorial.ipynb

* Create folder for course examples

* Update README.md

* Update README.md

* Update examples

* Update README.md

* Update README.md

* Update MNIST VAE examples

* Added MLP regression example

* Update README.md

* Create image_segmentation_Unet.ipynb

* Update README.md

* Documented and tested cell_counting_tutorial.ipynb

* improve dnn example

* Shift variant mie

* Position mie scatterer correctly

* implement set z

* implement mnist v1

* implement z dependence

* remove logging

* Implement flattening methods

* Implement pooling and resizing

* Implement TensorflowDataset

* Finalize MNIST

* Implement Malaria classification

* alpha0 release

* fix batchsize in fit

* implement dataset.take

* Implement datasets

* fix phase in mie

* Fix mie positioning and focusing

* Commit to new branch

* add tensorflow datasets dependence

* remove test

Co-authored-by: Jesús Pineda <jesus.pineda@physics.gu.se>
Co-authored-by: Jesús Pineda <36273229+JesusPinedaC@users.noreply.github.com>
Co-authored-by: Benjamin Midtvedt <benmid@student.chalmers.se>
Co-authored-by: Ccx55 <ccx555@gmail.com>
Coherence length fix for MieScatterer
Added coherence length to the conversion table
Coherence length fix in MieScatterer
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Change notes:

  • Fixed an issue using MieScatterer with the Repeat feature without wrapping it in Optics.
  • Fixed an issue where MieSphere would get an incorrect phase for some optical parameters.
  • Added a coherence_length parameter to MieScatterers to simulate limited spatial coherence.

@giovannivolpe giovannivolpe merged commit 1b5305b into master Nov 21, 2022
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4 participants