Update namelist_defaults_cam.xml for EW mpasa grids #4
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These files have been generated using MPAS-A init-atmosphere core for CAM-MPAS grids (case 13) based on standard 60 and 30km MPAS meshes. Also add default values for mpasa60 and mpasa30 hgrids. Needed default values for mpas_dt and mpas_len_disp since they are affected by hgrids.
These modifications should let QPC6 and F2000climo test cases to run by default for these grids. Added values for: - ncdata for 32 level cases starting 01-01-2000T00:00:00Z - bnd_topo - drydep_srf_file
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This is a simplification specific to EarthWorks. All QPC6/aquaplanet compsets on mpasa hgrids also use analytic_ic_type='us_standard_atmosphere'
Adds redundant entry to list of ncdata since QPC6 cases using mpasa120 grids mistakenly use mpasa120_L32_topo_coords_c201022.nc
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dazlich
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Aug 31, 2023
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@dazlich, understood. I copied that file from the /glade/p/univ/ucsu0085/inputdata and the F2000 runscript, so I don't think we can expect that to be in the cesmdata dir or server. If you point your case to "/glade/p/ucsu0085/inputdata2" (either with |
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Ah, got it @gdicker1. I've modified my scripts and all is good. Somewhere along the way I missed that inputdata2 directory. |
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That's because it's new (today)! It might not have everything (esp. for FullyCoupled), but I'm going to keep adding to it and adjusting our externals so hopefully it will in the coming weeks. |
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Great! I’ll add things for fully coupled there as I work with it. I’ll be adjusting ocean and seaice entries where they build their streams.
On Sep 1, 2023, at 12:42 PM, gdicker1 ***@***.***> wrote:
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That's because it's new (today)! It might not have everything (esp. for FullyCoupled), but I'm going to keep adding to it and adjusting our externals so hopefully it will in the coming weeks.
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dazlich
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Sep 2, 2023
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@gdicker1 , could you add the following line to the namelist_defaults_cam.xml file?
atm/cam/inic/mpas/x1.40962.pel.58levels_2000010100_init.nc
I've already copied the file over to inputdata2.
Later, I'll make a similar request for a 58L 15km file I have.
I've been working with ocn and ice files, but I can't copy them into their directories, you're the only one with write permission.
dazlich
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Sep 6, 2023
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Can you also add this line to the namelist_defaults_cam.xml file?
<bnd_topo hgrid="mpasa120" nlev="58" >atm/cam/topo/mpasa120_gmted2010_modis_bedmachine_nc3000_Laplace0100_20220728.nc</bnd_topo>
The 58L initial condition file I added was generated with this topo file.
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@dazlich I've added the ncdata and bnd_topo files you requested but I haven't pushed it yet. I'd like some context on x1.40962.pel.58levels_2000010100_init.nc and to maybe align it better with other ncdata files already in the namelist_defaults.xml.
Given that, would "cami_01-01-2000_00Z_mpasa120_L58_CFSR_230901.nc" be an acceptable name? |
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Bill Skamarock had it made for me last year. I will look into it further
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On Sep 8, 2023, at 5:28 PM, gdicker1 ***@***.***> wrote:
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@dazlich<https://github.com/dazlich> I've added the ncdata and bnd_topo files you requested but I haven't pushed it yet. I'd like some context on x1.40962.pel.58levels_2000010100_init.nc and to maybe align it better with other ncdata files already in the namelist_defaults.xml.
* What's the significance of "pel" in the file name? "PE layout"?
* Did you use CFSR data to initialize or some other data source?
Given that, would "cami_01-01-2000_00Z_mpasa120_L58_CFSR_230901.nc" be an acceptable name?
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On Sep 8, 2023, at 5:32 PM, Dazlich,Donald ***@***.***> wrote:
Bill Skamarock had it made for me last year. I will look into it further
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On Sep 8, 2023, at 5:28 PM, gdicker1 ***@***.***> wrote:
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@dazlich<https://github.com/dazlich> I've added the ncdata and bnd_topo files you requested but I haven't pushed it yet. I'd like some context on x1.40962.pel.58levels_2000010100_init.nc and to maybe align it better with other ncdata files already in the namelist_defaults.xml.
* What's the significance of "pel" in the file name? "PE layout"?
* Did you use CFSR data to initialize or some other data source?
Given that, would "cami_01-01-2000_00Z_mpasa120_L58_CFSR_230901.nc" be an acceptable name?
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I know there’s some discussion about multiple versions of 58L ic and their provenance. Looking at the global attributes of this file doesn’t give me any clue. If it indeed CFSR I have no problem with renaming it.
// global attributes:
:model_name = "mpas" ;
:core_name = "init_atmosphere" ;
:source = "MPAS" ;
:Conventions = "MPAS" ;
:git_version = "v7.3-370-g25365456-dirty" ;
:on_a_sphere = "YES" ;
:sphere_radius = 6371229. ;
:is_periodic = "NO" ;
:x_period = 0. ;
:y_period = 0. ;
:history = "mpirun -n 36 ./init_atmosphere_model" ;
:parent_id = "dyjep9dspg\n",
"" ;
:mesh_spec = "0.0" ;
:config_init_case = 7 ;
:config_calendar_type = "gregorian" ;
:config_start_time = "2000-01-01_00:00:00" ;
:config_stop_time = "2000-01-01_00:00:00" ;
:config_theta_adv_order = 3 ;
:config_coef_3rd_order = 1. ;
:config_num_halos = 2 ;
:config_nvertlevels = 58 ;
:config_nsoillevels = 4 ;
:config_nfglevels = 38 ;
:config_nfgsoillevels = 4 ;
:config_months = 12 ;
:config_geog_data_path = "/glade/work/wrfhelp/WPS_GEOG/" ;
:config_met_prefix = "ERA5" ;
:config_sfc_prefix = "SST" ;
:config_fg_interval = 86400 ;
:config_landuse_data = "MODIFIED_IGBP_MODIS_NOAH" ;
:config_topo_data = "GMTED2010" ;
:config_vegfrac_data = "MODIS" ;
:config_albedo_data = "MODIS" ;
:config_maxsnowalbedo_data = "MODIS" ;
:config_supersample_factor = 3 ;
:config_use_spechumd = "NO" ;
:config_ztop = 30000. ;
:config_nsmterrain = 0 ;
:config_smooth_surfaces = "YES" ;
:config_dzmin = 0.3 ;
:config_nsm = 30 ;
:config_tc_vertical_grid = "YES" ;
:config_specified_zeta_levels = "levels_L58_i1.txt" ;
:config_blend_bdy_terrain = "NO" ;
:config_extrap_airtemp = "linear" ;
:config_static_interp = "NO" ;
:config_native_gwd_static = "NO" ;
:config_gwd_cell_scaling = 1. ;
:config_vertical_grid = "YES" ;
:config_met_interp = "YES" ;
:config_input_sst = "NO" ;
:config_frac_seaice = "NO" ;
:config_pio_num_iotasks = 0 ;
:config_pio_stride = 1 ;
:config_block_decomp_file_prefix = "x1.40962.graph.info.part." ;
:config_number_of_blocks = 0 ;
:config_explicit_proc_decomp = "NO" ;
:config_proc_decomp_file_prefix = "graph.info.part." ;
:file_id = "0om2o5nbme" ;
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Files generated by Don Dazlich for use in EarthWorks compsets
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Shouldn't we get some 15km defaults defined as well since the new release is supposed to support it? |
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That would be good. Do you have a 15km case working that I could grab some filepaths from? |
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These are the files I’m using testing 15km. The atm ic is 58 layers. I don’t have anything 32 layers at 15km. Feel free to rename the ncdata and bnd_topo files. I’m not certain of the provenance of the ncdata file and if there is another it is almost certain be to be preferred, but this gets us something for now.
bnd_topo = '/glade/work/dazlich/km15/mpas_x1.2621442_cam_topo_file_gmted2010_modis_bedmachine_nc3000_Laplace0015_noleak_20230315.nc'
ncdata = '/glade/work/dazlich/km15/x1.2621442_camtopo_full_init.nc'
drydep_srf_file = '/glade/p/cesmdata/cseg/inputdata/atm/cam/chem/trop_mam/atmsrf_mpasa15_20210804.nc'
fsurdat = '/glade/p/cesmdata/cseg/inputdata/lnd/clm2/surfdata_map/surfdata_mpasa15_hist_78pfts_CMIP6_simyr2000_c211111.nc'
On Sep 18, 2023, at 12:01 PM, gdicker1 ***@***.***> wrote:
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That would be good. Do you have a 15km case working that I could grab some filepaths from?
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Includes ncdata for 58 levels along with corresponding bnd_topo and drydep_srf_file
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Alright, I got these files added to namelist_defaults_cam.xml and inputdata2
The fsurdat file was already added to EarthWorksOrg/CTSM#1 |
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Looks like line 343 setting bnd_topo for mpasa15 is incomplete and needs to be terminated with </bnd_topo>
On Sep 19, 2023, at 11:57 AM, gdicker1 ***@***.***> wrote:
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Alright, I got these files added to namelist_defaults_cam.xml and inputdata2
* bnd_topo: atm/cam/topo/mpas_15_nc3500_c20230315.nc
* ncdata: atm/cam/inic/mpas/cami_01-01-2000_00Z_mpasa15_L58_c230316.nc
* drydep_srf_file: atm/cam/chem/trop_mam/atmsrf_mpasa15_c20210804.nc
The fsurdat file was already added to EarthWorksOrg/CTSM#1<EarthWorksOrg/CTSM#1>
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It would be handy to define mpas_len_disp for 15, 7.5 and 3.75km in the defaults
On Sep 19, 2023, at 11:57 AM, gdicker1 ***@***.***> wrote:
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Alright, I got these files added to namelist_defaults_cam.xml and inputdata2
* bnd_topo: atm/cam/topo/mpas_15_nc3500_c20230315.nc
* ncdata: atm/cam/inic/mpas/cami_01-01-2000_00Z_mpasa15_L58_c230316.nc
* drydep_srf_file: atm/cam/chem/trop_mam/atmsrf_mpasa15_c20210804.nc
The fsurdat file was already added to EarthWorksOrg/CTSM#1<EarthWorksOrg/CTSM#1>
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Sorry looks like I didn't get that into the
Agreed. I'll add those soon |
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With the addition of a 32 level 15km notopo file, I think this PR can be wrapped up. |
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Add default values for mpasa120, mpasa60, and mpasa30 grids. These change should reduce the amount of commands needed to setup FHS94, FKESSLER, F2000climo, and QPC6 compsets.