Elimination of conflicting external references #7
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These modifications allow for the elimination of conflicting external references at the link step of compilation. They go hand in hand with branches of the same name in mpas-ocean and mpas-seaice. In brief, the modules that generate the duplicate external references have a unique dummy string, MPASAOS, in place of the mpas in the module names, and the module use statements. This modified source is place in new directories so that sed can be applied to all files in the new directory. Sed replaces the new dummy string with mpaso (ocean) or mpass (seaice) and renames the file so that dependency analysis continues to work.