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JOSS paper folder + update citations #233

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Apr 21, 2021
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b675db1
copies template
navidcy Nov 27, 2020
c651a05
Merge branch 'master' into JOSS-paper
navidcy Dec 2, 2020
be7286a
paper placeholder
navidcy Dec 2, 2020
331d013
some updates
navidcy Dec 2, 2020
e297f8b
Merge branch 'master' into JOSS-paper
navidcy Dec 24, 2020
fb0b113
some updates
navidcy Dec 24, 2020
8da2e15
better title
navidcy Dec 24, 2020
8aebe87
Merge branch 'master' into JOSS-paper
navidcy Jan 10, 2021
011b64a
draft v0.0.1
navidcy Jan 10, 2021
362fc2e
Update paper.md
glwagner Jan 21, 2021
ba90c0a
Merge branch 'master' into JOSS-paper
navidcy Jan 22, 2021
625d734
some additions based on @glwagner's suggestions
navidcy Jan 22, 2021
25a920e
some minor rephrasing + typo
navidcy Jan 22, 2021
1e81da6
adds figure
navidcy Jan 25, 2021
e335437
numbers not latexed
navidcy Jan 25, 2021
749192c
numbers not latexed
navidcy Jan 25, 2021
2f5858b
numbers not latexed
navidcy Jan 25, 2021
8d7e54a
numbers not latexed
navidcy Jan 25, 2021
0cc8cd2
adds Journals PDF Generator
navidcy Jan 25, 2021
930b500
remove \times
navidcy Jan 25, 2021
962fc0b
draft-pdf on JOSS-paper branch
navidcy Jan 25, 2021
01b1d36
Merge branch 'master' into JOSS-paper
navidcy Jan 25, 2021
99d5354
remove draft-pdf
navidcy Jan 25, 2021
b005e69
adds remark about reproducing fig
navidcy Jan 25, 2021
7352dcb
don't use CamelCase
navidcy Jan 25, 2021
2bf9bb6
change title + minor
navidcy Jan 25, 2021
73adccd
fix typo
navidcy Jan 25, 2021
58a3dda
no dash
navidcy Jan 25, 2021
c845686
Update paper.md
BrodiePearson Jan 26, 2021
eb9b5d6
Update paper.bib
BrodiePearson Jan 26, 2021
50ef569
Update paper.md
BrodiePearson Jan 26, 2021
3c2e6a5
Update paper.md
BrodiePearson Jan 26, 2021
54ee9d6
Update paper.md
BrodiePearson Jan 26, 2021
d546939
minor edit
navidcy Jan 26, 2021
0ef823e
Merge pull request #189 from BrodiePearson/patch-1
navidcy Jan 26, 2021
592769d
Merge branch 'master' into JOSS-paper
navidcy Jan 28, 2021
e3d3e13
Merge branch 'JOSS-paper' of https://github.com/FourierFlows/Geophysi…
navidcy Jan 28, 2021
ead373d
updates paper after some discussion in #187
navidcy Jan 28, 2021
be2295b
adds doi in Karash 2020
navidcy Jan 28, 2021
78b74d3
better journal name for Karash 2020
navidcy Jan 28, 2021
8ba0e5b
minor fixes in bib
navidcy Jan 28, 2021
5890453
adds BCP grant
navidcy Jan 28, 2021
7fc4b4e
no ~
navidcy Jan 28, 2021
2f5f234
rephrase the Dedalus mention
navidcy Jan 28, 2021
38f24ad
Merge branch 'JOSS-paper' of https://github.com/FourierFlows/Geophysi…
navidcy Jan 29, 2021
1fd6b7d
attempt to make the title fit 2 lines ;)
navidcy Jan 29, 2021
79824af
adds FourierFlows zenodo citation
navidcy Jan 29, 2021
f9ff600
only initials for authors first names
navidcy Jan 29, 2021
b3581c2
updates contributors list
navidcy Jan 29, 2021
ee5a9fe
adds Lia's project
navidcy Jan 29, 2021
1b48939
andre's comments
navidcy Jan 29, 2021
46b61eb
and -> &
navidcy Jan 29, 2021
5c40803
adds teaching refs
navidcy Jan 29, 2021
391d920
correct multicite style
navidcy Jan 29, 2021
7ce4303
oxford comma
navidcy Jan 29, 2021
55cb70a
one less acronym
navidcy Jan 29, 2021
b0e2ed4
thank Valentin
navidcy Jan 29, 2021
b53107f
adds BCP grant back in
navidcy Jan 29, 2021
54d6811
Kolmogorov
navidcy Jan 29, 2021
2e80865
fix typo
navidcy Jan 30, 2021
d57f965
merge latest master
navidcy Mar 11, 2021
054afcd
addressing minor remarks by @eviatarbach
navidcy Mar 11, 2021
3619cd8
Merge branch 'master' into JOSS-paper
navidcy Mar 30, 2021
a2e0b7c
first attempt to address reviews; split paper in sections
navidcy Mar 30, 2021
4699eea
address reviews v2
navidcy Mar 30, 2021
7db7d38
adds remarks about MAOOAM and qgs
navidcy Mar 30, 2021
19ada9e
adds most of @BrodiePearson's remarks
navidcy Apr 2, 2021
46dd1de
some rephrasing of the statement of field
navidcy Apr 2, 2021
004efc2
fix qgs bib entry
navidcy Apr 2, 2021
2a66ca9
address everyones comments + attempt to bullet-point comparisons
navidcy Apr 5, 2021
7c4fe0e
bullet points v2
navidcy Apr 5, 2021
3ca21e5
finished comparisson with other packages
navidcy Apr 5, 2021
25f1fae
bit more on Dedalus
navidcy Apr 5, 2021
d43a969
resolves conflict + merge master
navidcy Apr 6, 2021
536c8ad
fix Andre's affiliation + MAOOAM languages
navidcy Apr 7, 2021
d980973
add julia ref + update figure
navidcy Apr 7, 2021
8841eaf
update fig caption
navidcy Apr 7, 2021
07aaaac
some minor changes in bib
navidcy Apr 7, 2021
b783638
merge master + fix conflicts
navidcy Apr 15, 2021
83c1c19
minor corrections by @pdebuyl
navidcy Apr 16, 2021
d850a67
merge master
navidcy Apr 16, 2021
5478bc2
update Pearson et al. bit entry
navidcy Apr 19, 2021
22de1cd
update Pearson et al. bit entry
navidcy Apr 19, 2021
e6cd670
update Pearson et al. bit entry
navidcy Apr 19, 2021
38af08b
rephrase on what's done and what's going on
navidcy Apr 19, 2021
401efe2
adds citations + badge
navidcy Apr 21, 2021
2fda929
adds JOSS citations
navidcy Apr 21, 2021
918ee4c
remove accidental entry
navidcy Apr 21, 2021
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14 changes: 8 additions & 6 deletions README.md
Original file line number Diff line number Diff line change
Expand Up @@ -119,12 +119,16 @@ than happy to help along the way.
For more information, check out our [contributor's guide](https://github.com/FourierFlows/GeophysicalFlows.jl/blob/master/CONTRIBUTING.md).


## Cite
## Citing

The code is citable via [zenodo](https://zenodo.org). Please cite as:
If you use GeophysicalFlows.jl in research, teaching, or other activities, we would be grateful
if you could mention GeophysicalFlows.jl and cite our paper in JOSS:

> Constantinou et al., (2021). GeophysicalFlows.jl: Solvers for geophysical fluid dynamics problems in periodic domains on CPUs & GPUs. Journal of Open Source Software, 6(60), 3053, doi:[10.21105/joss.03053](https://doi.org/10.21105/joss.03053)
> Constantinou et al., (2021). GeophysicalFlows.jl: Solvers for geophysical fluid dynamics problems in periodic domains on CPUs & GPUs. Journal of Open Source Software, 6(60), 3053, doi:[10.21105/joss.03053](https://doi.org/10.21105/joss.03053)

The bibtex entry for the paper is:

```bibtex
@article{Constantinou2021,
doi = {10.21105/joss.03053},
url = {https://doi.org/10.21105/joss.03053},
Expand All @@ -137,9 +141,7 @@ The code is citable via [zenodo](https://zenodo.org). Please cite as:
title = {GeophysicalFlows.jl: Solvers for geophysical fluid dynamics problems in periodic domains on CPUs & GPUs},
journal = {Journal of Open Source Software}
}

> Navid C. Constantinou, Gregory L. Wagner, and co-contributors. (2021). FourierFlows/GeophysicalFlows.jl: GeophysicalFlows v0.12.1 (Version v0.12.1). Zenodo. [http://doi.org/10.5281/zenodo.1463809](http://doi.org/10.5281/zenodo.1463809)

```

[FourierFlows.jl]: https://github.com/FourierFlows/FourierFlows.jl
[documentation]: https://fourierflows.github.io/GeophysicalFlowsDocumentation/dev/
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1 change: 1 addition & 0 deletions docs/Project.toml
Original file line number Diff line number Diff line change
Expand Up @@ -3,6 +3,7 @@ CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba"
Documenter = "e30172f5-a6a5-5a46-863b-614d45cd2de4"
FFTW = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341"
FourierFlows = "2aec4490-903f-5c70-9b11-9bed06a700e1"
GeophysicalFlows = "44ee3b1c-bc02-53fa-8355-8e347616e15e"
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👁️

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that was only there for 40secs! amazing you noticed it!

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👀

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these eyes are a bit creepy
#1984

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🙄

Literate = "98b081ad-f1c9-55d3-8b20-4c87d4299306"
Plots = "91a5bcdd-55d7-5caf-9e0b-520d859cae80"
Printf = "de0858da-6303-5e67-8744-51eddeeeb8d7"
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4 changes: 3 additions & 1 deletion docs/src/index.md
Original file line number Diff line number Diff line change
Expand Up @@ -60,7 +60,9 @@ course of time various people have contributed to GeophysicalFlows.jl, including
If you use GeophysicalFlows.jl in research, teaching, or other activities, we would be grateful
if you could mention GeophysicalFlows.jl and cite our paper in JOSS:

> Constantinou et al., (2021). GeophysicalFlows.jl: Solvers for geophysical fluid dynamics problems in periodic domains on CPUs & GPUs. Journal of Open Source Software, 6(60), 3053, doi:[10.21105/joss.03053](https://doi.org/10.21105/joss.03053)
Constantinou et al., (2021). GeophysicalFlows.jl: Solvers for geophysical fluid dynamics problems in periodic domains on CPUs & GPUs. _Journal of Open Source Software_, **6(60)**, 3053, doi:[10.21105/joss.03053](https://doi.org/10.21105/joss.03053)

The bibtex entry for the paper is:

```bibtex
@article{Constantinou2021,
Expand Down