Export track data like in the Jbrowse 1 #2810
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Hi, I was wondering if there was a way to export track data, like in the Jbrowse 1? I remember that we could export track data on the region that we were visualizing. For example exporting genes in GFF3 format from a specific region:
Is there a similar feature with the Jbrowse 2? Thanks for any answer you have for me ! |
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Replies: 1 comment 3 replies
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Indeed, we do not have this feature in jbrowse 2 (yet...)! If you have gff3tabix tracks, on the command line you can try running tabix http://host/path/to/your/gff.gz chr1:400-500 This will get a GFF snippet. We could definitely consider incorporting this to JB2 though |
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Thanks a lot, I'll keep that in mind! |
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@cmdcolin Our users are also interested in a similar feature to export a selected region in gff or gbk format :) |
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@jrodiger-lifemine thanks for adding the interest, I think this will indeed be a great feature to have. currently tracking this issue here #3094 |
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Indeed, we do not have this feature in jbrowse 2 (yet...)!
If you have gff3tabix tracks, on the command line you can try running
tabix http://host/path/to/your/gff.gz chr1:400-500
This will get a GFF snippet.
We could definitely consider incorporting this to JB2 though