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The menu fits the limits your account has. Anthropic stopped reporting the 5-hour Window for some accounts, and the menu kept the height it had with three rows, so the remaining two sat in a box with empty space above and below. It now sizes to its rows: two where the 5-hour Window is gone, three where it's still reported.
Install or upgrade with brew install --cask gordonbeeming/tap/claude-bar.