* First db table and api.

* Final changes for prototype.

* Add integration tests.

* Fix indentation.

* Add prototype of newest changes.

* Add URI and URL objects, and new endpoints.

* Add Apache icons.

* Change tokens to licenses.

* Change URIException to IllegalStateException.

Merged back develop

DD-421 wrong location header

DD-424 post wrong json

DD-425 missing error messages

This reverts commit 0cf7359.

…license-info-to-publish-dataset-dialog

DD-422 posting same license error

…lish-dataset-dialog

DD-446 add license info to publish dataset dialog

* First changes for multi-license UI.

* Add prototype multi-license support in UI.

* Add TermsOfUse changes and Custom terms.

* Revert adjustments in install.sh from last commit.

* Remove old license code in TermsOfUseAndAccess and references to them.

* Make Publish Dataset license fields conditional again.

* Remove borders of fields in Publish Dataset.

…dropdown-list

DD-482 Filter inactive licenses from dropdown list

…rd license

…ly-fields-before-saving-standard-license

DD-484 empty custom license only fields before saving standard license

…-description-on-dropdown-change

DD-485 update license logo and description on dropdown change

….sql

Cleanup and document license api

…way-upgrade-script

DD-486 Create V5.5.0.3__7440-multi-license-add-column-to-termsofuseandaccess…

DD-511 Open links to license in new tab

Co-authored-by: Jan van Mansum <janvanmansum@users.noreply.github.com>

…ound database call

Replaced redundant (and incomplete) uniqueness check with try-cath around database call

…lyway-script

Add cc0 via flyway

…nfiguration API (#94)

* DD-515. Display decent message when trying to delete referenced license.

* Improved message

Co-authored-by: Jan van Mansum <janvanmansum@users.noreply.github.com>

* WiP

* Wip

* Fixes

Co-authored-by: Jan van Mansum <janvanmansum@users.noreply.github.com>

…alog (#96)

* Update JsonPrinter.java

* Restructured DatasetVersion license in JsonPrinter.java

* updated Datasets.java, DatasetPage.java and dataset.xhtml

* refactored getCustomTermsTab function, added logic to switch to all dataset tabs

* allow guestaccess and return 404 if no custom license

DD-548 added EditMode check to setLicense

…cess-flyway-script

DD-522 License flyway script must update existing records in termsofuseandaccess table

…r.description text

…e-field

DD-533 improve UI text license field

* updated Datasets.java, DatasetPage.java and dataset.xhtml

* refactored getCustomTermsTab function, added logic to switch to all dataset tabs

* allow guestaccess and return 404 if no custom license

* changed custom url response to 303 see other

* added license shortDescription, and UI shortDescription to publish dialog

* fixed issue, shortdescription was not saving when updating license

* compilation check fix

* added short description tooltip for license url & image

* initial semantic API endpoint

* merge new fields with existing ones

* differences from IQSS/develop that break compilation

* Add jsonld lib to compact to local context

* use expand/compact, refactor, add :startmigration endpoint

* try fix for parse error

* log value

* return dataset

* manage versionState, add debug output

* move debug ore generation after configuring dataset

* set versionstate, simplify, move terms init outside loop

* parse version number

* fix toStrings

* debug null pointer in DataverseFieldTypeInputLevel

* add support for fields with their own formal URI

* allow non-published to support debugging and future use

* refactor, use expanded version directly

* add modification time

* expanded has array with 1 val - handle it

* log compound values to start

* compact with no context for decontextualize

* handle appending and compound fields

* sort compound field children by display order

* parse date/time correctly

* Revert "sort compound field children by display order"

This reverts commit 8596ac8.

* typo

* now use Uri instead of label when matching terms

* set dsfield of dsfvalue

* additional debug, always set display order

* generate URIs for child types to match current ore maps

* allow oremap to work w/o modified date for debug

* null check on date itself

* fix compound value iteration

don't replace existing value - always add a new value, but, if not
appending, clear the list of values to start

* fix ttype map for terms with no uri - use title not name

as is done currently in generating the ORE map

* handle date format variations, including DV internal ones

see note in Dataverses - using Date() versus Timestamp() causes a
difference in precision and, perhaps surprisingly, a difference in the
response from version.getLastUpdateTime().toString() in creating the
OREmap.

* and the format in current published bags

* initial endpoint to release a migrated dataset

* create metadataOnOrig field

* add metadataOnOrig to solr

* use Finalize Publication command

Curate is for cases with an existing published version and migrated
datasets only have 1 version

Also - don't want to go through Publish command since it creates new
version numbers, etc.

* add debug, allow more details in 400 responses

* fix date-time issue

* typos

* create transfer bag type with orig files

handle no checksums on orig files

* missing tab

* add type param

* add semantic metadata api call only

* remove OREMap parameter

* fix error handling

FWIW: We have an error handler for the
edu.harvard.iq.dataverse.util.json.JsonParseException class but not for
javax.json.stream.JsonParsingException which was getting caught by the
Throwable handler and returned as a 500 error with json message {}

* append to current terms

* add replace param

* handle append on terms - fix cut/paste errors

* fix logic

* specify default

* make replace still append for multiple val fields

* add migrating switch

* expose uri in datasetField api

* track defined namespaces

and avoid having contexts with specific entries for terms that are in a
namespace already

* define equals, avoid duplicates in list

* replace string with const

* constant for CC0_URI

* GET/DELETE endpoints

* 7130-handle missing contact name

* Fix multiple description logic for info file

* put is always for :draft version

* don't cast to String[]

* add more logging

* handle unpublished versions

* add method that can return JsonObjectBuilder

which can be used with existing AbstractApiBean.ok()

* log details on failure

* multiple updates/fixes, added logging

* fix terms retrieval

* date test fixes for locale

* Java 11 update and test fixes inc. for different exception mesg

* update pom for v11 and running tests under 11

* fix for edu.harvard.iq.dataverse.api.AdminIT test fail in Java 11

The DV code tested in testLoadMetadataBlock_ErrorHandling assumed it
could parse the message of an ArrayOutOfBounds exception as an it to
determine the column that fails. This message is now a String. Rather
than parse it (and fail if it changes), I modified the code so that the
length of the values array is visible in the catch and can be sent
directly (the first out of bounds index is if/when the index is
values.length).

* flyway script adding the new constraint (IQSS#7451)

* A diagnostics script, to check and fix any duplicated harvested storageidentifiers, and re-check the local ones for any new dupes, just in case. (IQSS#7451)

* A pre-release text for the new diagnostics script (will discuss the approach in the PR/dv-tech) (IQSS#7451)

* Arming the script bomb... (IQSS#7451)

* switched to a conditional constraint. (IQSS#7451)

* Update PRE-RELEASE-INFO.txt

* update StringUtils package

* Do not count thumbnails and prep downloads, when redirecting to S3 (similarly to how these downloads are treated when done internally, without redirecting to the remote bucket, in line 457). IQSS#7924

* Implement usage of user supplied handle for authentication. This is an optional parameter.

* Fix mising ";" coding error.

* move metadataOnOrig out of citation block

which makes it optional

* IQSS#7431 remove XML prolog from the individual records of OAI-PMH ListRecords response

* IQSS#7431 adding integration tests

* Bump httpclient from 4.5.5 to 4.5.13

Bumps httpclient from 4.5.5 to 4.5.13.

---
updated-dependencies:
- dependency-name: org.apache.httpcomponents:httpclient
  dependency-type: direct:production
...

Signed-off-by: dependabot[bot] <support@github.com>

* More forceful language in the "pre-release note" about the dvobject constraint
being enforced on existing databases in the next release. (IQSS#7451)

* renamed the flyway script for the dvobject constraint (since it didn't make it into 5.5) (IQSS#7451)

* Better check HandleAuthHandle for default value of null. If unequal to null then use it.

* Change "string" to "String" with uppercase first character

* build(ci): atempt to fix coveralls report. IQSS#7977

* Change parameter "HandleAuthHandle" so it start with a lower case character when it is being assigned.

* Update 5.3-release-notes.md

Removed incorrect statement: (If you are using a PostgreSQL server on `localhost:5432`, you can omit `dataverse.db.host` and `dataverse.db.port`.)

* sync with migration api branch (tests, docs, bug fixes)

* rename SQL update script IQSS#7451

* prevent page from blowing up if no remind msg in bundle IQSS#7975

* get "create dataset" working again IQSS#7986

* remove TODO IQSS#7986

Per comment from Jim: "This works and doesn't break the anonymized
access functionality as I thought it might."

* add anonymized access methods

* fix test

* Update doc/release-notes/6497-semantic-api.md

Co-authored-by: Philip Durbin <philipdurbin@gmail.com>

* Update doc/sphinx-guides/source/developers/dataset-semantic-metadata-api.rst

Co-authored-by: Philip Durbin <philipdurbin@gmail.com>

* add create example, remove solr schema copies file

* removed debug logging

* missing header

* Added an extra clause for some IQSS-specific harvested identifiers.
Extremely unlikely to be encountered anywhere else; but need to be
included to be able to QA on a copy of the prod. db.
Plus some extr diagnostics. (IQSS#7451)

* IQSS#7893 link Rserve documentation to necessary files in Dataverse repo

* IQSS#7893 remove redundant script mention per feedback from Leonid

* Adding -H + API token to curl commands

Without ``-H`` and the API token in these curl commands, the native API rejects the user's requests on the ground that they are a 'guest'.

* remove metadataOnOrig per review

* IQSS#7893 use fixedwidthplain text instead, clone master instead of develop

* fixes the small formatting issue with the link (IQSS#7893)

* Update doc/sphinx-guides/source/api/native-api.rst

Co-authored-by: Philip Durbin <philip_durbin@harvard.edu>

* Update doc/sphinx-guides/source/api/native-api.rst

Co-authored-by: Philip Durbin <philip_durbin@harvard.edu>

* Update doc/sphinx-guides/source/api/native-api.rst

Co-authored-by: Philip Durbin <philip_durbin@harvard.edu>

* Update doc/sphinx-guides/source/api/native-api.rst

Co-authored-by: Philip Durbin <philip_durbin@harvard.edu>

* Update documentation to be more consise about the handle and give a better example.

* IQSS#7936 append deaccessionDialog.reasons with periods for proper display

* add missing create method (in migrate PR)

* No "@id" npe fix

* avoid npe in logging

* only require "@id" when migrating

* fix logging in create case

* WIP

* Temporary conflict solution

* Added marker comments where code must be revised/fixed later '// TODO: FIX FOR MULTI-LICENSE'

Co-authored-by: qqmyers <qqmyers@hotmail.com>
Co-authored-by: Leonid Andreev <leonid@hmdc.harvard.edu>
Co-authored-by: Gustavo Durand <scolapasta+github@gmail.com>
Co-authored-by: Robert Verkerk <robert.verkerk@surfsara.nl>
Co-authored-by: pkiraly <pkiraly@gwdg.de>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Oliver Bertuch <o.bertuch@fz-juelich.de>
Co-authored-by: Kevin Condon <kcondon@hmdc.harvard.edu>
Co-authored-by: Philip Durbin <philip_durbin@harvard.edu>
Co-authored-by: Philip Durbin <philipdurbin@gmail.com>
Co-authored-by: Don Sizemore <don.sizemore@gmail.com>
Co-authored-by: Benjamin Peuch <benjamin.peuch@gmail.com>
Co-authored-by: Jan van Mansum <janvanmansum@users.noreply.github.com>

* fixed all multi-license TODO's, there's a bug in metadata export now

* added LicenseDTO to fix exporting, modified dependant tests

* changed tabs to spaces

* added LicenseDTO to fix exporting, modified dependant tests

* code refactoring and test modification

* added a isDefault check before license deletion

* changed Bad Request to Conflict for delete License call

* changed bad request to not found error for delete license call

…n-licenses-default

DD-562 Implement GET /api/admin/licenses/default

* implemented set license via semantic API

* fixed some of the required logic

…ccess-license-column

DD-549 Is field/column termsofuseandaccess.license still necessary?

…iver

DD-552 Remove references to "waiver" from code and UI

* Updated SwordServiceBean to support multi-license

* fixing AdminIT license tests

* changed hardcoded license ID to always pick the last added license