Intermittent problem with being unable to download study data

[HazelMurphy]

Dear Eamonn

For some reason out of the 9 datasets I have loaded one (NEBC-S-8) is not allowing access to the ISA study data. See the urls below. It seems only for one dataset the final location of the data files on our server has not been updating and instead the database is pointing to a different location which no longer exists.

http://bii.nwl.ac.uk/bioinvindex/study.seam;jsessionid=A4610EB984F7AC825A43E5DD0D6117D5?studyId=NEBC-S-8

http://bii.nwl.ac.uk/repo/submission_repo/study_NEBC-S-8_IEfDVQa2Nz/

The only difference I can make of the ISA files is that NEBC-S-8 was the only one loaded as a full ISAarchive zip file.

Would you be able to advise on how we rectify this?

Regards

Hazel

[eamonnmag]

This is working now. There is a built in server cache storing the studies. If the study was unloaded then reloaded, the obfuscation code will change. Therefore you need to access clearStudyCache.seam to reset the cache on the application server.

So to clear cache: http://bii.nwl.ac.uk/bioinvindex/clearStudyCache.seam

http://bii.nwl.ac.uk/repo/submission_repo/study_NEBC-S-8_0mRs10NyjC/

[HazelMurphy]

Many thanks Eamonn

Do you have a list of solutions like this anywhere? I've copied in Tim so he will know this one in future but would be good to keep these solutions somewhere together for those of us learning the system.

Hazel

-----Original Message-----
From: Eamonn Maguire [mailto:reply@reply.github.com]
Sent: 17 February 2012 09:29
To: Murphy, Hazel
Subject: Re: [BioInvIndex] Intermittent problem with being unable to download study data (#48)

This is working now. There is a built in server cache storing the studies. If the study was unloaded then reloaded, the obfuscation code will change. Therefore you need to access clearStudyCache.seam to reset the cache on the application server.

So to clear cache: http://bii.nwl.ac.uk/bioinvindex/clearStudyCache.seam

http://bii.nwl.ac.uk/repo/submission_repo/study_NEBC-S-8_0mRs10NyjC/

---

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#48 (comment)

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[eamonnmag]

@proccaserra and I will add an FAQ section to the wiki for the BioInvIndex with this information.

Thanks,

Eamonn

[HazelMurphy]

Brilliant

-----Original Message-----
From: Eamonn Maguire [mailto:reply@reply.github.com]
Sent: 17 February 2012 09:40
To: Murphy, Hazel
Subject: Re: [BioInvIndex] Intermittent problem with being unable to download study data (#48)

@proccaserra and I will add an FAQ section to the wiki for the BioInvIndex with this information.

Thanks,

Eamonn

---

Reply to this email directly or view it on GitHub:
#48 (comment)

This message (and any attachments) is for the recipient only. NERC
is subject to the Freedom of Information Act 2000 and the contents
of this email and any reply you make may be disclosed by NERC unless
it is exempt from release under the Act. Any material supplied to
NERC may be stored in an electronic records management system.

[HazelMurphy]

Sorry where is this wiki?

-----Original Message-----
From: Eamonn Maguire [mailto:reply@reply.github.com]
Sent: 17 February 2012 09:40
To: Murphy, Hazel
Subject: Re: [BioInvIndex] Intermittent problem with being unable to download study data (#48)

@proccaserra and I will add an FAQ section to the wiki for the BioInvIndex with this information.

Thanks,

Eamonn

---

Reply to this email directly or view it on GitHub:
#48 (comment)

This message (and any attachments) is for the recipient only. NERC
is subject to the Freedom of Information Act 2000 and the contents
of this email and any reply you make may be disclosed by NERC unless
it is exempt from release under the Act. Any material supplied to
NERC may be stored in an electronic records management system.

[eamonnmag]

At the minute, it's now here :)

https://github.com/ISA-tools/BioInvIndex/wiki/FAQ

On 17 February 2012 09:51, HazelMurphy <
reply@reply.github.com

wrote:

Sorry where is this wiki?

-----Original Message-----
From: Eamonn Maguire [mailto:reply@reply.github.com]
Sent: 17 February 2012 09:40
To: Murphy, Hazel
Subject: Re: [BioInvIndex] Intermittent problem with being unable to
download study data (#48)

@proccaserra and I will add an FAQ section to the wiki for the BioInvIndex
with this information.

Thanks,

Eamonn

---

Reply to this email directly or view it on GitHub:
#48 (comment)

This message (and any attachments) is for the recipient only. NERC
is subject to the Freedom of Information Act 2000 and the contents
of this email and any reply you make may be disclosed by NERC unless
it is exempt from release under the Act. Any material supplied to
NERC may be stored in an electronic records management system.

---

Reply to this email directly or view it on GitHub:
#48 (comment)

---

Eamonn Maguire
Lead Software Engineer - ISA tools http://www.isa-tools.org

University of Oxford Tel: +44(0)1865 610788
Oxford e-Research Center
7 Keble Road, Oxford skype: maguire1986

OX1 3QG, UK