1.1.0

What's Changed

• Refactored to use input dir instead of samplesheet by @krokicki in #1
• End user improvements by @krokicki in #2
  • Improved documentation
  • Exposed additional params including --overwrite and --compression
  • Changed default compression to LZ4
  • Moved the default memo directory from /tmp, which causes issues on the Janelia cluster.
  • Bioformats2raw always creates a 0/ folder at the top level for single images. By default, this pipeline now unwraps those images by moving them up a level. This can be disabled with --unwrap=false

Full Changelog: 1.0.0...1.1.0