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Deduplicate empty auto-registered projects and extra local checkouts during gateway mode reconciliation.
When a replica already holds both a canonical project and an empty duplicate project pointing at the same local
repository path (such as when 0.6.431.39 auto-registered empty projects before store adoption), adoptStore
now archives the empty duplicate project, retires its initial board, and detaches its checkout in CRDT so the
embedded gateway does not sync empty duplicates back.
Ensures each surviving local project has at most one active local checkout (preferring checkouts referenced by
cards, chats, and schedules) so AccountView and sharedProjects always resolve project.path.