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Version 5.1.1

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@jduitama jduitama released this 03 Jun 23:14
v5.1.1
f72ad35

Version 5.1.1 of NGSEP. Main changes:

  • New function to calculate statistics of genome assemblies
  • MultisampleVariantsDetector. Implemented multithreading. New option to specify the number of threads.
  • SingleSampleVariantsDetector. Implemented multithreading. New option to specify the number of threads.
  • SIH. New option to output a bam file with assignments of aligned reads to haplotypes.
  • TransposonsFinder. The output is now a prefix to output multiple files.
  • TransposonsFinder. New option to activate the deNovo identification of TEs. The current version implements a new algorithm to identify conserved LTRs.
  • TransposonsFinder. New options to control the kmer length for the de-novo algorithm, the kmer length for the search algorithm and the window length for the search algorithm.
  • Diversity statistics. Included Fisher exact test for departure from HWE.
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