FragPipe-PDV is a customized version of PDV for FragPipe. I changed the GUI layout, optimized the database structure, and implemented new functions fitting FragPipe results especially.
The FragPipe-PDV packages are free to download at https://github.com/Nesvilab/FragPipe-PDV/releases.
The FragPipe-PDV has already been released together with FragPipe. However, the latest version of FragPipe-PDV can be downloaded here and updated manually in FragPipe.
(1) Open the tools in your FragPipe folder.
(2) Open the FP-PDV in the tools folder.
(3) Copy the latest FragPipe-PDV package and replace the old one in the FP-PDV folder.
To cite the PDV package in publications, please use:
Li, K., et al. "PDV: an integrative proteomics data viewer." Bioinformatics, Volume 35, Issue 7, 01 April 2019, Pages 1249–1251. https://doi.org/10.1093/bioinformatics/bty770