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FragPipe v12.2
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@chhh chhh released this 30 Jan 21:11
· 314 commits to gh-pages since this release
12.2
769c6b4

Windows users

  • Download FragPipe.exe and just run that. Windows 10 might show a UAC prompt, saying that this is not a trusted program, it's up to you whether to run it or not.
    • If you don't have a compatible Java version, you will be redirected to a website where you can download one.
  • Or download FragPipe-12.2.zip.
    • Zip contains FragPipe.bat file, which can be started by either clicking or running it from the command line.
  • Or download the FragPipe-12.2.jar.
    • You can start the jar file with java -jar FragPipe-12.2.jar or start javaw -jar FragPipe-12.2.jar if you prefer to not have the console window open.
      If Java is configured to auto-run .jar files, double clicking might also work.

Linux/MacOS users

  • Either download FragPipe-12.2.zip, which contains FragPipe shell script to start the program
  • Or download the FragPipe-12.2.jar and run with java -jar FragPipe-12.2.jar.

Changelog:

v12.2:

  • Check FASTA file for presence of decoys before running PeptideProphet or Report
  • Fix some Philosopher workspace related bugs
  • Spectral library generation update
  • IMQuant is now IonQuant

v12.1:

  • IMQuant fixes after initial release.
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