FragPipe v13.0

chhh released this 05 Jun 22:40

· 2791 commits to master since this release

Downloading

The zip (FragPipe-13.0.zip) doesn't contain Java, you will need Java 1.8+ to run.
The other zip with -jre- in its name (FragPipe-jre-13.0.zip) contains a Java runtime for Windows only.

Running

Unzip the file
In /bin subdirectory you will find a shell script for Linux, bat file for Windows and an exe file for Windows

Note to Windows users

Windows 10 might show a UAC prompt, saying that this
is not a trusted program, it's up to you whether to run it or not.

Changelog:

v13.0:

Brand new fragpipe, rebuilt almost from ground up
TMT-Integrator, PTM-Shepherd, IonQuant included
Spectral library generation with EasyPQP
Workflows for easier quick-start and sharing

v12.2:

Check FASTA file for presence of decoys before running PeptideProphet or Report
Fix some Philosopher workspace related bugs
Spectral library generation update
IMQuant is now IonQuant

Assets 4