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There are numerous changes and updates in this release. GPU processing has been streamlined for WGS samples, there is now full WES support, and there are a host of wrapper scripts and utility resources to be used. This pipeline is the equivalent of BWA-MEM 0.7.15 and GATK 4.2 and uses NVIDIA's Clara Parabricks 4.0.0-1 and runs on WUSTL's HPC compute1 with LSF job management.
Full Changelog: v2.0...v2.0.1