shift achilles github pat secret to build

OHDSI · Jan 4, 2024 · 9dc99e5 · 9dc99e5
1 parent 5e02356
commit 9dc99e5
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Showing 2 changed files with 5 additions and 4 deletions.
diff --git a/achilles/Dockerfile b/achilles/Dockerfile
@@ -1,7 +1,6 @@
 FROM docker.io/rocker/r-ver:4.2.3
 
-#RUN echo 'GITHUB_PAT=' /run/secrets/GITHUB_PAT >> /root/.Renviron
-
+RUN echo 'GITHUB_PAT=' /run/secrets/GITHUB_PAT >> /root/.Renviron
 RUN GITHUB_PAT=$(cat /run/secrets/GITHUB_PAT)
 
 RUN <<EOF

diff --git a/docker-compose.yml b/docker-compose.yml
@@ -289,12 +289,14 @@ services:
 
   broadsea-run-achilles:
     profiles: [ "cdm-postprocessing", "achilles" ]
-    build: ./achilles
+    build: 
+      context: ./achilles
+      secrets:
+        - GITHUB_PAT
     platform: "linux/amd64"
     container_name: broadsea-run-achilles
     secrets:
       - CDM_CONNECTIONDETAILS_PASSWORD
-      - GITHUB_PAT
     volumes:
       - jdbc-drivers-data:/jdbc
       - cdm-postprocessing-data:/postprocessing