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v3.3.0

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@chenv3 chenv3 released this 11 Mar 21:22
· 21 commits to main since this release
v3.3.0
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What's Changed

  • Quality of usage shinycell updates by @rroutsong in #23
  • Supporting ATAC and ARC versions and multi downstream analysis by @chenv3 in #25
    • Added support for Cellranger ATAC 2.2.0 and Cellranger ARC 2.1.0. This includes now requiring the --cellranger flag to be used for both pipelines.
    • Adding nCount, nFeature, ribosomal, and mitochondrial QC plots to reports
    • Adding initial and final cell count numbers to Seurat QC reports
    • Edited how pipeline handles sample names in GEX, VDJ, and ATAC pipelines to better handle samples that are a subset of another sample name
    • Documentation has been reworked to have separate pages for each pipeline
    • Edits to MULTI pipeline
      • Supports running HTO, OCM, or Flex
      • Creates a clean QC report and metric summary report that can be used for delivery if some demultiplexed samples are not detected
    • Edits to VDJ pipeline
      • Adding chain flag for use in VDJ pipeline

Full Changelog: v3.2.1...v3.3.0

Contributors

rroutsong and chenv3
Assets 2
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