Caron, Lessard, Wu, Poisot

[tpoisot]

AUTHOR

Dear @ReScience/editors,

I request a review for the following replication:

Original article

Title: Insect natural enemies as regulating factors
Author(s): M.P. Hassell
Journal (or Conference): Journal of Animal Ecology
Year: 1985
DOI: https://doi.org/10.2307/4641
PDF:

Replication

Author(s): @DominiqueCaron @vincelessard @QileWu @tpoisot
Repository: https://github.com/BIO6032/2018_replication_hassell_1985
PDF: https://github.com/BIO6032/2018_replication_hassell_1985/blob/master/article/Caron-Lessard-Wu-Poisot-2018.pdf
Keywords: population dynamics, ecology, stochastic models
Language: Julia
Domain: ecology

Results

• Article has been fully replicated
• Article has been partially replicated
• Article has not been replicated

Potential reviewers

---

EDITOR

• Editor acknowledgment (@pdebuyl 9 June 2018)
• Reviewer 1 (@ChrisRackauckas 13 June 2018)
• Reviewer 2 (@jsta 14 June 2018)
• Review 1 decision: accept 12 October 2018
• Review 2 decision: accept 20 February 2019
• Editor decision [accept/reject] 13 March 2019

[pdebuyl]

@ChrisRackauckas Thanks for the prompt reading.

@tpoisot please update the figures, I'll check the pdf a final time then. You are early w.r.t. your announced date of March 10, no patience was needed :-)

[tpoisot]

@pdebuyl Figures updated, and I've built the PDF

[pdebuyl]

Hi @tpoisot @DominiqueCaron thanks for the update.

See BIO6032#30

If you are ok with the changes, I'll follow with the publication. See this throwaway branch https://github.com/pdebuyl/ReScience-submission/tree/caron_2018_edit_with_pdf for a compiled pdf. I'll also have to get rid of the binary pandoc-crossref from the repo...

I could run the code with Julia 1.0.3 (the pdf has these figures) with only a few warnings

This package has been renamed to StatsPlots.
The name StatPlots has been deprecated.

Please run

`]rm StatPlots`
`]add StatsPlots`

Failure to update will mean that you do not receive new developments.

┌ Warning: seriestype density has been moved to StatsPlots.  To use: `Pkg.add("StatsPlots"); using StatsPlots`
└ @ Plots ~/.julia/packages/Plots/UQI78/src/args.jl:1054

(last warning repeated 11 more times).

[pdebuyl]

Woops, I also forgot to request the DOIs for all references.

[DominiqueCaron]

I added most DOIs.
For books, I added the ISBN. For Thompson (1924), I did not find any DOI...

I will let @tpoisot look at it, merge it and update the pdf.

[tpoisot]

@pdebuyl all done (I think)

[pdebuyl]

Hi @DominiqueCaron @tpoisot thank you, I'll publish this shortly.

[rougier]

Gentle reminder

[pdebuyl]

Hi @DominiqueCaron @tpoisot I need the ORCID of everyone for the Zenodo archive. I found the one of Timothée Poisot, I would like the three others.

[pdebuyl]

I could get by without the ORCID.

This submission has been accepted for publication, and has been published with the DOI

[pdebuyl]

Hi folks, the paper is online and I am just waiting for the toc of the journal to be updated.

@rougier @khinsen I hereby "Inform the editors-in-chief about the new publication".

[rougier]

Thanks. Can you also try to tell the journal editor-in-chief and authors of the original article that it has been replicated ?