ENH: prepare docker image using neurodebian snapshots #13
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…ots for different base OSs and FSL versions
to build a docker image following "the recipe" but using jessie as it was some time in 2015 with FSL 5.0.9 (of some Debian revision): ./Simple_Prep_docker jessie 20150306T060524Z and then to execute actual analysis use docker run -it --rm repronim:simple_prep_yoh_jessie_20150306T060524Z /bin/bash -c '. setup_environment; cd simple_workflow-master && python run_demo_workflow.py --key 11an55u9t2TAf0EV2pHN0vOd8Ww2Gie-tHp9xGULh_dA && python check_output.py'
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yup source doesn't work directly, this is why we do this in many cases: https://github.com/BIDS-Apps/nipypelines/blob/master/Dockerfile#L12 |
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so for now we could stay with direct sourcing in the call -- listing/hardcoding all ENVs would not be possible for varying versions of FSL etc. How do you like it otherwise? ;) |
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it looks good for now. next things are:
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* origin/master: added preprint adds license - closes ReproNim#12 DOC: improve README to point to needing curl and unzip to install environment etc
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ok then it is ready to be merged for now -- README.md documentation was tuned up to fit it in ;) |
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to build a docker image following "the recipe" but using jessie as it was some time in 2015 with FSL 5.0.9 (of some Debian revision):
and then to execute actual analysis use