v5.4.0

What's Changed

• feat: switch to prefer notebooks over queries if present in json (for eventual FE update), log cleanup by @themaherkhalil in #2559
• Fixing logic in AbstractModelEngine for full prompt with unnamed room by @ryanweiler92 in #2560
• feat: filesystem reactors for user assets folder by @themaherkhalil in #2563
• fix: npe when passing type into function engine by @themaherkhalil in #2564
• feat: adding unzip reactors for each fs operation by @themaherkhalil in #2565
• Tomcat update 9.0.118 by @radkalyan in #2570
• feat: collect all binaries and dedup for parallel ldd execution, set permissions via Files.setAttribute instead of pb by @themaherkhalil in #2574
• fix: set test query on pooled datasource by @agmontem-devel in #2575
• Moved API testing to use temporary directory and deleted TestFolder by @EJV20 in #2571
• Compaction by @tlokeshrao in #2317
• feat: agent configs + hooks by @kunal0137 in #2531
• feat: creating a chroot template on startup to improve performance of subsequent user chroot creation by @themaherkhalil in #2579
• fix(assets): stop double URL-decoding saved asset content by @greglum in #2580
• fix: handful of clean up items in RunAgent by @kunal0137 in #2581
• feat: docker runs script to create the chroot template by @themaherkhalil in #2582
• feat: namespace sandbox by @kunal0137 in #2583
• fix: limit path length by @kunal0137 in #2584
• Fix namespace jail path by @kunal0137 in #2585
• feat: adding arm64 image build by @themaherkhalil in #2586
• fix: handle both text and tool calls for openai and gemini + anthropi… by @kunal0137 in #2551
• feat: improve loading of python modules, switch to non-trace for engine methods that dont allow cancellation, move utility methods to client process wrapper by @themaherkhalil in #2587
• fix: skip cancel trace for engine-owned python (disableCancelTrace handler guard) by @themaherkhalil in #2589
• feat: support py log capture by @agmontem-devel in #2588
• Py log capture span check by @agmontem-devel in #2590
• Agent Specific Parameters + File Conversion Hook by @ryanweiler92 in #2591
• feat: changing method to return token instead of user object by @themaherkhalil in #2593
• fix for scheduler errors related to postgres util null blob handling by @agmontem-devel in #2596
• fix: not catching invokation error in lambda function, compilation error fix in unit test by @themaherkhalil in #2599
• Updating Skills to add to config_json column by @ryanweiler92 in #2600
• bump Log4j to 2.25.4 by @Subhadeepghosh1 in #2598
• fix: sql scan results, vector to arraylist, logging improvements by @themaherkhalil in #2602
• Agent Hooks by @tlokeshrao in #2592
• fix: closing streams, log cleanup, remove non-ascii chars by @themaherkhalil in #2605
• feat(model): add redis room message locking by @kunal0137 in #2606
• chore: remove old junit 4 annotations and switch to junit 6 annotations by @EJV20 in #2604
• fix: removing large images in favor of smaller ones, image is deterministic based on name hash by @themaherkhalil in #2611
• fix: removing cyclical room reference between room and messages, close streams, remove unnecessary executor shutdown by @themaherkhalil in #2612
• chore: rename logger to classLogger, remove unused code and table from local master, cleanup for common issues by code scans by @themaherkhalil in #2613
• fix: prevent SQL injection by using PreparedStatement in MasterDatabaseUtility by @snehakumari369 in #2609
• fix: closing streams, removing deprecated method, more specific exception thrown by @themaherkhalil in #2614
• fix: proper reference to static variables, log cleanup by @themaherkhalil in #2617
• fix: closing filewalk stream, closing pgvector stmt by @themaherkhalil in #2618
• Insert Skills into System Prompt for Agent Run Context by @ryanweiler92 in #2615
• feat: guard CreateProject against WORKSPACE and SKILL types by @tlokeshrao in #2594
• feat: add provider=bedrock-mantle path to OpenAiClient by @rjjava123 in #2619
• Unoserver Reactor by @ryanweiler92 in #2621
• fix: set new input message object when going from fullPrompt to semoss message structure, adding new details for model engine usage by @themaherkhalil in #2623
• chore: update model usage for better consistency by @themaherkhalil in #2624
• fix: rename setVisibile → setVisible typo in AbstractMessage by @tlokeshrao in #2630
• Update model usage query by @tlokeshrao in #2547
• feat: hide system prompt for playground through themes by @kunal0137 in #2607
• feat: agent run after room locking by @kunal0137 in #2608
• fix: streaming as true and returning tool results back by @kunal0137 in #2632
• fix: remove subagent complexity with parent child communication by @kunal0137 in #2633
• fix: resolving compilation error for test, removing non-ascii chars by @themaherkhalil in #2634
• chore: removing legacy cot logic by @themaherkhalil in #2636
• fix: set path w/ pythonhome var by @kunal0137 in #2637
• fix: usage message parts instead of message type for semoss agent har… by @kunal0137 in #2635
• Normalize Thinking and Reasoning Parameters for GenAI Client by @ryanweiler92 in #2639
• feat: adding github app creation per instance, sync app with github webhook for changes, removing legacy git code by @themaherkhalil in #2641
• fix: update netty jar by @kunal0137 in #2642
• Handling thinking blocks for claude code streaming by @ryanweiler92 in #2643
• Create and Update Workspaces with Skills by @ryanweiler92 in #2644
• fix: close streams in try/finally block, close executors, proper and/or boolean logic to prevent dual evaluation by @themaherkhalil in #2645
• feat: synk code workflow by @kunal0137 in #2646
• Feat snyk action by @kunal0137 in #2647
• Feat snyk action by @kunal0137 in #2648
• Feat snyk action by @kunal0137 in #2649
• Fix git commit username by @travon-speller in #2640
• feat: allowing multiple projects to reference the same repo by @themaherkhalil in #2652
• Enhance audit log search filters with list of input by @samarthKharote in #2468
• feat: query output fix for timestamps with new UI, reactors all contain s for Logs by @themaherkhalil in #2656
• fix: passing in roomId for security check to get list of options by @themaherkhalil in #2657
• chore: adding consistent structure for owl creator by @themaherkhalil in #2660
• Updating Anthropic Py Pacakges by @ryanweiler92 in #2661
• feat: reactor to pull the metadata of admin dbs, init of admin dbs to use owl creator for sql creation by @themaherkhalil in #2664
• feat: allow for subdir with github manager for monorepo by @ppatel9703 in #2653
• chore: removing unused methods by @themaherkhalil in #2665
• Show hidden dot folders with exceptions by @ryanweiler92 in #2663
• fix: npe when value is null in github map, improved help by @themaherkhalil in #2666
• fix: using reentrant lock instead of sync on payload struct monitor due to java21 virtual thread pinning by @themaherkhalil in #2670
• feat: add working dir info to system prompt by @kunal0137 in #2671
• feat: ordering the return by table and then column by @themaherkhalil in #2672
• chore: upgrade neo4j to remove fat jar for single connector by @themaherkhalil in #2673
• fix: process as flat method now accounts for DATABASE_TYPE.JENA_TDB, other changes are code formatting + log cleanup by @themaherkhalil in #2675
• fix: resolving sql scan issues on neo4j utility methods by @themaherkhalil in #2676
• Scan Disk for Skill Files/Folders by @tlokeshrao in #2662
• Updating the platform skill md files with the latest changes from the now defunct external repository by @ryanweiler92 in #2678
• chore: switching to maven hosted jar by @themaherkhalil in #2680
• feat: support image handling in agent run by @kunal0137 in #2679
• chore: update tomcat and jars by @themaherkhalil in #2682
• [Snyk] Fix for 1 vulnerabilities by @snyk-io[bot] in #2681
• feat: default agent tools by @kunal0137 in #2655
• Platform Skills by @ryanweiler92 in #2683
• fix: allowing multiple spaces around boolean AND and OR conditionals by @themaherkhalil in #2685
• fix: limit leaking of playground system prompt via project id by @kunal0137 in #2684
• feat: return json on get workspace by @kunal0137 in #2687
• feat: return message history if prompted in run agent by @kunal0137 in #2688
• refactor: hoist workspace input validation + CONFIG_JSON mirror to AbstractWorkspaceReactor by @tlokeshrao in #2695
• feat: track attached skills in PROJECTDEPENDENCIES by @tlokeshrao in #2658
• feat: model engine in agent config json by @kunal0137 in #2686
• feat: adding return examples for operations by @themaherkhalil in #2697
• fix: correcting typo in name by @themaherkhalil in #2698
• fix: removing references to workspace table that is removed by @themaherkhalil in #2699
• feat: consolidating the user login flow into a strategy pattern performed by the token filler by @themaherkhalil in #2700
• feat: group logic in token filler to allow provider specific impl, default redirect uri since it always matches the endpoint and can be autoset without configuration by @themaherkhalil in #2701
• chore: updating owl file location, value auto-updated on load for shift of database OWL in assets folder by @themaherkhalil in #2702
• Updating Py Packages by @ryanweiler92 in #2705
• feat: return ROOM_NAME from GetRoomOptions by @tevanburen in #2706
• fix: updating from log4j-slf4jv1 bridge to v2 bridge due to class loading error on different OS by @themaherkhalil in #2709
• Add skills directory to semosshome.xml by @ryanweiler92 in #2710
• feat: enable batch llm by @kunal0137 in #2696
• Fixing anthropic bedrock import by @ryanweiler92 in #2712
• feat: creating an abstract python class for all the guardrail impl that start up a server, adding local python guardrail engine that expects specific response format from function by @themaherkhalil in #2715
• feat: allowing a public folder to make it easier to build and view certain assets for read only users by @themaherkhalil in #2717
• chore: adding error message if file cannot be found by @themaherkhalil in #2718
• fix: guard against pulling an engine/project that was just deleted by @themaherkhalil in #2720
• Support AWS guardrails for Anthropic Bedrock engines by @ryanweiler92 in #2713
• feat: hitl on run agent with dedicated urls by @kunal0137 in #2719
• feat: adding option to use redis for cluster sync between containers by @themaherkhalil in #2723
• chore: cleanup user tracking logs, comments, resource closing; fix: minor sql bugs in ps logic by @themaherkhalil in #2725
• feat: remove hasportal and portalname from project table by @themaherkhalil in #2726
• fix: proper query projection returns by @themaherkhalil in #2727
• feat: exposing limit, offset, projecttype, search filters in query by @themaherkhalil in #2728
• Feat/platform skills overhaul by @ryanweiler92 in #2722
• chore: switching to hashmap and contains instead of looping through array by @themaherkhalil in #2729
• feat: adding breakdown by token type, adding gliner masking of values by @themaherkhalil in #2730
• Updating pypackages 07.13.26 by @ryanweiler92 in #2731
• Feat audit logging run agent by @kunal0137 in #2732
• Playwright socket app by @ibrahimmahaba in #2692
• fix: adding deletion of user access requests by @themaherkhalil in #2735
• feat: switching reactors to default to auto-execution + no ui by @themaherkhalil in #2737
• Add al2023 dockerfile by @resmas-tx in #2736
• Chore agent cleanup by @kunal0137 in #2739
• Fix replay functionality in Playwright sockets by @ibrahimelnemr in #2742
• Overhauling Python Tokenizers by @ryanweiler92 in #2754
• chore: adding read me by @themaherkhalil in #2755
• Remove thinking_level from gemini-3-pro-image by @ryanweiler92 in #2756
• Dont allow multiple tool responses on a tool call by @tlokeshrao in #2752
• feat: ubuntu24 + java 25 by @kunal0137 in #2757
• Fix skill creation identity bugs and move new skill content to public/ by @ryanweiler92 in #2761
• fix: set a default header if header cleanup results in empty string, simplify reactor log, cleanup logs in db creation reactors by @themaherkhalil in #2763
• feat: no longer requiring engine name or project name to be unique by @themaherkhalil in #2765
• feat: adding ability to connect via redis sentinel for HA by @themaherkhalil in #2766
• fix: Run agent bugfixes by @kunal0137 in #2760
• feat: updating redis jar and using unified interface for direct, sentinel, and cluster connections by @themaherkhalil in #2767
• chore: removing unused code referencing legacy impl of remote semoss as sparql by @themaherkhalil in #2769
• fix(sonar): resolve confirmed blocker bugs by @kunal0137 in #2768
• chore: cleanup log statements, redis cluster starts thread instead of executor, singleton with init fix by @themaherkhalil in #2770
• chore: cleanup wrappers logs, use virtual thread for query tracking, remove unused user asset classes, remove unused utility methods by @themaherkhalil in #2774
• feat: removing upper limit for queries in SQL/SPARQL query, feat: no selectors required for FileRead() | Collect() to default to all headers by @themaherkhalil in #2775
• fix: auth checks for reactors - checking project and engine permissions by @kunal0137 in #2776
• fix: switch from replaceAll to replace when regex not required, fixing log statements in affected files, other minor fixes by @themaherkhalil in #2777
• fix: switching to locks instead of synchronized blocks for startup of thread and on write of payload by @themaherkhalil in #2778
• chore: cleanup of python pandas syntax code generation and pivot generation by @themaherkhalil in #2780
• Add "App Building Agent" as a global, immutable system agent by @ryanweiler92 in #2772
• chore: remove shadowing of parent class variables, cleanup toexcel and toppt classes by @themaherkhalil in #2782
• feat: switching to lock instead of method synchronization by @themaherkhalil in #2783
• fix: switching to locks from synchronized blocks by @themaherkhalil in #2786
• fix: new .json has {} instead of new file string, new default for _mcp.json files, allow pipeline proxy to not break on {} with no pipelines key by @themaherkhalil in #2787
• fix: smss creation in proper folder by @themaherkhalil in #2788
• Successfully edit model smss via UI by @tlokeshrao in #2771
• feat: adding support for openai server web search tool by @themaherkhalil in #2801
• fix: Moving initialization of AbstractEmbedder engine after assigning model name to self in BedrockEmbedder class. by @jareallen213 in #2802
• chore: removing unused code, cleanup of code around OWL files by @themaherkhalil in #2804
• chore: removing unused files, fix: handle factor type as string for pandas by @themaherkhalil in #2805
• Add multi modal embeddings support; remove legacy image embeddings path by @ryanweiler92 in #2806
• fix: exclude fst maven plugin defined incorrectly as dependency by @themaherkhalil in #2808
• chore: simplifying and adding more compose examples by @themaherkhalil in #2809
• feat: cleanup log/error statements by @themaherkhalil in #2810
• feat: add hybrid search support for opensearch vector db by @stelbailey in #2667
• feat: update weaviate version, add hybrid search, add filtering by @mattfreshwaters in #2704
• fix(redis): gate pool creation on REDIS_ENABLED by @ppatel9703 in #2733

New Contributors

• @greglum made their first contribution in #2580
• @rjjava123 made their first contribution in #2619
• @snyk-io[bot] made their first contribution in #2681
• @stelbailey made their first contribution in #2667

Full Changelog: v5.3.0...v5.4.0