SeqForge v0.2.0

SeqForge 0.2.0

SeqForge 0.2.0 expands the project from a core DNA sequence analysis library into a more practical command-line toolkit.

Highlights

• Added a functional CLI with:
  • seqforge gc
  • seqforge stats
  • seqforge translate
  • seqforge orf
  • seqforge version
• Added direct FASTA file input from the CLI.
• Added multi-record FASTA processing.
• Added explicit reading-frame selection for translation and ORF detection.
• Added forward, reverse, and both-strand ORF searches.
• Added strand-aware ORF output for the CLI.
• Added consistent CLI input resolution for literal sequences and FASTA files.
• Improved error handling for missing and invalid FASTA files.
• Centralized codon interpretation for translation and ORF detection.
• Expanded the automated test suite to 118 tests.
• Updated the documentation for the new CLI and FASTA workflows.

Examples

seqforge stats sequence.fasta
seqforge translate gene.fasta --frame 1
seqforge orf genome.fasta --strand both

Notes

SeqForge 0.2.0 continues to focus on a clear Python API, predictable behaviour, automated testing, and an intuitive command-line experience.