Release igv_ug_1.28

force this branch to build versions

Release igv_ug_1.27

Ultima Flow Render Changes, Part 2

Goto mate added

Goto Supplemental Alignment

Ultima style version build

Alt Flow Del Render

del quality fix

tp direction fix

T0 priority

add T0 to base info panel

insert annotation fix

INS should simply use base quality

fix INS with len>1 colors

additional rendering changes

findQualByTPValue: symmetric considerations

Del 1.- assume high QV if none known

GARRETY_LOW_PROB_MODE mode

Newer version of INDEL quality marks - not done yet

TP to return maxQ if no exacg match found

additional changes in indel visi

getQualityFromTP to return highest q value from read if no tp matches

hmer indels must span whole gap/block

protect against files with no read group

missing QV values on inserts brought back

non-central quality should be doubled when displayed

Release igv_ug_1.26

Ultima Flow Render Changes, Part 2

Goto mate added

Goto Supplemental Alignment

Ultima style version build

Alt Flow Del Render

del quality fix

tp direction fix

T0 priority

add T0 to base info panel

insert annotation fix

INS should simply use base quality

fix INS with len>1 colors

additional rendering changes

findQualByTPValue: symmetric considerations

Del 1.- assume high QV if none known

GARRETY_LOW_PROB_MODE mode

Newer version of INDEL quality marks - not done yet

TP to return maxQ if no exacg match found

additional changes in indel visi

getQualityFromTP to return highest q value from read if no tp matches

hmer indels must span whole gap/block

protect against files with no read group

missing QV values on inserts brought back

non-central quality should be doubled when displayed

Release igv_ug_1.25

INDEL coloring uses min quality option added

Release igv_ug_1.24

missing QV values on inserts brought back

Release igv_ug_1.23

protect against files with no read group

Release igv_ug_1.22

hmer indels must span whole gap/block

Release igv_ug_1.21

getQualityFromTP to return highest q value from read if no tp matches

Release igv_ug_1.20

additional changes in indel visi

Release igv_ug_1.19

TP to return maxQ if no exacg match found