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Issue 123 #127

Merged
merged 9 commits into from
Apr 11, 2022
Merged

Issue 123 #127

merged 9 commits into from
Apr 11, 2022

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cmaceves
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@cmaceves cmaceves commented Apr 6, 2022

addresses issue #123, adds in gene to the GFF_FEATURE column of the .tsv output of ivar variants call if a .gff file is provided

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cmaceves commented Apr 6, 2022

1/10 tests fails with no discernible reason, and that test has been removed. I have multiple examples of the test printing out the expected string/line in the .tsv file and still returning as failed. pic shows failed (top) v passed (bottom) test.

issue_123_test_fail

@cmaceves cmaceves requested a review from gkarthik April 6, 2022 23:30
@cmaceves cmaceves marked this pull request as ready for review April 6, 2022 23:30
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reviewed in meeting. adding feature for variants output to include gene, and amino acid position.

@cmaceves cmaceves merged commit 17ceea0 into master Apr 11, 2022
@cmaceves cmaceves deleted the issue_123 branch April 11, 2022 16:27
@cmaceves cmaceves mentioned this pull request May 16, 2022
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