Build and Test #79
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| name: Build and Test | |
| on: | |
| workflow_dispatch: | |
| push: | |
| pull_request: | |
| schedule: | |
| - cron: '0 0 1 * *' | |
| jobs: | |
| create-env: | |
| name: ${{ matrix.os }} | |
| runs-on: ${{ matrix.os }} | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [ubuntu-latest] | |
| steps: | |
| - name: checkout repository | |
| uses: actions/checkout@v3 | |
| - name: create environment with conda | |
| uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| miniconda-version: "latest" | |
| channels: conda-forge,bioconda,defaults | |
| auto-activate-base: false | |
| activate-environment: cryptkeeper | |
| environment-file: environment.yml | |
| - name: check solution | |
| run: | | |
| conda env export | |
| - name: install ostir | |
| run: | | |
| pip install ./ | |
| - name: test ostir | |
| run: | | |
| which ostir | |
| python -m unittest |