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BEAST X v10.6.0-beta7

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@github-actions github-actions released this 02 Nov 07:28
· 27 commits to main since this release

What's Changed

  • Optimization fast tree model by @rambaut in #1274
  • Optimization fast intervals by @rambaut in #1275
  • Fix HMC and shrinkage clock XML in BEAUti with several clock models by @plemey in #1272
  • Restore per-tree taxa lists in BEAUti for partitions with different taxa by @plemey in #1271
  • Replace the legacy profilers with a single ChainProfile by @rambaut in #1276
  • Beauti laf override by @rambaut in #1277
  • BEAUti: only add the rate indicator operator when BSSVS is on by @plemey in #1278
  • Add integrated (inverse-Gamma) coalescent prior, ported and fixed for… by @maxbiostat in #1273
  • Use a hash lookup when compressing site patterns by @plemey in #1269
  • Use absolute file path for checkpoints specified in XML by @hongsamL in #1267
  • Write checkpoint files to same directory as log files by @rambaut with @Copilot in #1280
  • Relaxed random walk fixes: reciprocal gamma/Cauchy RRWs in BEAUti, branch-rate Hessian, debug root rate by @plemey in #1279
  • Clean and beautiful by @rambaut in #1283
  • Checkpoint resume: restore height-parameter ownership; re-baseline MCMCTest by @msuchard in #1282

Full Changelog: v10.6.0-beta6...v10.6.0-beta7