v1.1.4

What's Changed

• ci: fix stale CLI options in the integration workflow by @ypriverol in #310
• fix(mudata): write empty strings for null gene names by @ypriverol in #311
• refactor(transforms): map genes from the FASTA only, drop biopython and mygene by @ypriverol in #312
• fix(gene-map): copy dataset subdirectories and guard the destination by @ypriverol in #314
• fix(gene-map): keep gene names the FASTA cannot resolve by @ypriverol in #315
• Fix integration workflow CLI options and enhance gene mapping by @ypriverol in #313
• fix(mudata): widen strings before combining chunks by @ypriverol in #316
• feat(mudata): record which modalities failed to build by @ypriverol in #318
• fix(dataset): make integrity verification actually verify by @ypriverol in #317
• fix(openms): carry protein group q-value and genes on features by @ypriverol in #320
• docs(feature): document null protein attribution for shared peptides by @ypriverol in #322
• Fix integrity verification and handle large string concatenation by @ypriverol in #321
• fix(converters): preserve OpenMS field evidence and document null values by @Shen-YuFei in #324
• fix(converters): fill the trivially derivable pg fields from #300 by @ypriverol in #323
• docs(coverage): document pg_names and contaminant population by @ypriverol in #325
• feat(transform): fill protein properties from an optional FASTA by @ypriverol in #326
• fix(transform): preserve coverage evidence and refresh structure counts by @Shen-YuFei in #327
• Enhance converters and transform for protein properties and coverage by @ypriverol in #328
• fix(transform): keep QPX parquet encoding and read partitioned PSM evidence by @ypriverol in #329
• fix(openms): fall back to merged groups for runs without protein inference by @ypriverol in #330
• Fix protein properties handling and improve PSM evidence reading by @ypriverol in #331

Full Changelog: v1.1.3...v1.1.4