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v0.2.0-smFRET calculation

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@Justin-J-Miller Justin-J-Miller released this 10 Jun 13:32
· 59 commits to master since this release
0.2.0
3b8c23e
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Learn about vigilant mode.

Major Changes

  • Added code to calculate smFRET from MSMs either accounting for dye dynamics or not.
  • Added app for calculating smFRET from MSMs.
  • python 3.12 compliant.
  • introduced warm restarts for clustering with kmedoids.
  • Tests migrated from nose to pytest.

Minor changes

  • Auto tests migrated to CI
  • updated documentation on https://enspara.readthedocs.io/ reflecting the addition of smFRET code
  • Optional installation of conda environment with provided environment.yml file.
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