spark tools write bams even when .sam is specified #4295

lbergelson · 2018-01-29T20:40:59Z

We should either fix this or have it reject you up front when you try.

…ixes #4295.

* spark tools will now write SAM files when the requested output file ends in .sam * fixes #4295

lbergelson added the Spark label Jan 29, 2018

lbergelson changed the title ~~spark tools write bam's even when .sam is specified~~ spark tools write bams even when .sam is specified Jan 30, 2018

droazen assigned tomwhite Feb 5, 2018

droazen added the bug label Feb 5, 2018

droazen added this to the Engine-1Q2018 milestone Feb 5, 2018

tomwhite added a commit that referenced this issue Feb 28, 2018

Fix Spark tools to write SAM files when a .sam suffix is specified. F…

89f7c9e

…ixes #4295.

tomwhite mentioned this issue Feb 28, 2018

Fix Spark tools to write SAM files when a .sam suffix is specified. #4471

Merged

droazen modified the milestones: Engine-1Q2018, Engine-2Q2018 Apr 6, 2018

tomwhite added a commit that referenced this issue May 11, 2018

Fix Spark tools to write SAM files when a .sam suffix is specified. F…

7c79de8

…ixes #4295.

lbergelson closed this as completed in #4471 May 11, 2018

lbergelson pushed a commit that referenced this issue May 11, 2018

Spark tools can write SAM files #4295. (#4471)

80e5ab9

* spark tools will now write SAM files when the requested output file ends in .sam * fixes #4295

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spark tools write bams even when .sam is specified #4295

spark tools write bams even when .sam is specified #4295

lbergelson commented Jan 29, 2018

spark tools write bams even when .sam is specified #4295

spark tools write bams even when .sam is specified #4295

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lbergelson commented Jan 29, 2018