Validation Alleles set as "." or "-"

[Ryan-Singh]

Looking at the oncotator files issued from firebrowse, the validation alleles can be listed as . or - when there are no samples for it to validate with. Huge problem, as one cannot tell if the allele is a "-" (gap) or if it simply does not have data available. See LUAD vs KIRC.

[LeeTL1220]

this sounds like a question for GDAC or the firebrowse team. Oncotator is
simply rendering what was provided by the analyst.
On Nov 16, 2015 12:19 PM, "Ryan-Singh" notifications@github.com wrote:

Looking at the oncotator files issued from firebrowse, the validation
alleles can be listed as . or - when there are no samples for it to
validate with. Huge problem, as one cannot tell if the allele is a "-"
(gap) or if it simply does not have data available. See LUAD vs KIRC.

—
Reply to this email directly or view it on GitHub
#336.