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1. bwa bwa Public

   Forked from lh3/bwa

   Burrow-Wheeler Aligner for pairwise alignment between DNA sequences

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2. illumina2bam illumina2bam Public

   Forked from wtsi-npg/illumina2bam

   Generate and process BAM files from Illumina sequencing instrument files

   Java

3. picard picard Public

   Forked from broadinstitute/picard

   A set of tools (in Java) for working with next generation sequencing data in the BAM (http://samtools.github.io/hts-specs) format.

   Java

4. nanocomp nanocomp Public

   Forked from gt1/nanocomp

   Conversion of nano pore HDF5 to FastQ

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5. bcftools bcftools Public

   Forked from samtools/bcftools

   This is the official development repository for BCFtools. To compile, the develop branch of htslib is needed: git clone --branch=develop git://github.com/samtools/htslib.git htslib

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6. pileup.js pileup.js Public

   Forked from hammerlab/pileup.js

   Interactive in-browser track viewer

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