@charite

Computational Biology Charité Berlin

CBCB - Computational Biology Group at Charité Berlin

  • charite.github.io

    Charité Computational Biology Website

    CSS 3 8 Updated Jun 29, 2018

  • jannovar

    Annotation of VCF variants with functional impact and from databases (executable+library)

    bioinformatics vcf variant-annotation variant-filtration
    Java 26 23 Updated Apr 26, 2018

  • hyperSMURF

    Weka implementation of hyperSMURF using EasyEnsemble and SMOTE

    Java 4 GPL-3.0 Updated Dec 16, 2017

  • topodombar

    Phenotypic analysis of microdeletions and toplogical chromosome domain boundaries

    Python 1 4 BSD-2-Clause Updated Nov 8, 2017

  • Q

    Q ChIP-seq peak caller

    C++ 17 4 Updated May 19, 2017

  • hyperSMURF-tutorial

    Forked from visze/hyperSMURF-tutorial

    Tutorial how you can the hyperSMURF algorithm in your Java application

    Java 1 Updated Apr 24, 2017

  • asdpex

    Java 4 1 Updated Dec 14, 2016

  • weka-GWAVA

    Weka implementation of the GWAVA method from Ritchie, G. R. S., Dunham, I., Zeggini, E., & Flicek, P. (2014). Functional annotation of noncoding sequence variants. Nat Methods, 11(3), 294–296. http://doi.org/10.1038/nmeth.2832

    Java GPL-3.0 Updated Aug 16, 2016

  • chipseqknime

    KNIME workflow for ChIP-Seq http://charite.github.io/chipseqknime/

    CSS Updated Mar 29, 2016

  • jannovar_tutorial

    Jannovar Tutorial Applications

    Java 1 1 Updated May 27, 2015

  • jannovar_example_app

    Minimal Maven application using Jannovar

    Java 1 Updated May 26, 2015

  • denovocaller

    Denovo Variation Caller for simple familie trios (mother, father, affected child)

    Java 2 GPL-3.0 Updated Jan 16, 2015

  • ngspipeline

    Our NGS Pipeline using Nextflow

    5 3 BSD-3-Clause Updated Dec 9, 2014
    • 3

    People
    @drseb drseb Sebastian Köhler
    @holtgrewe holtgrewe Manuel Holtgrewe
    @martenj martenj Marten