Computational Biology Berlin

Repositories

• jannovar

  Annotation of VCF variants with functional impact and from databases (executable+library)

  bioinformatics vcf variant-annotation variant-filtration
  Java 32 35 32 1 Updated Apr 29, 2020

• asdpex
  Java 1 6 1 0 Updated Dec 12, 2019

• charite.github.io

  Charité Computational Biology Website
  CSS 8 3 0 0 Updated Jan 15, 2019

• hyperSMURF

  Weka implementation of hyperSMURF using EasyEnsemble and SMOTE
  Java GPL-3.0 4 2 0 0 Updated Dec 16, 2017

• topodombar

  Phenotypic analysis of microdeletions and toplogical chromosome domain boundaries
  Python BSD-2-Clause 4 1 0 0 Updated Nov 8, 2017

• Q

  Q ChIP-seq peak caller
  C++ 4 17 1 0 Updated May 19, 2017

• hyperSMURF-tutorial

  Forked from visze/hyperSMURF-tutorial

  Tutorial how you can the hyperSMURF algorithm in your Java application
  Java 1 0 0 0 Updated Apr 24, 2017

• weka-GWAVA

  Weka implementation of the GWAVA method from Ritchie, G. R. S., Dunham, I., Zeggini, E., & Flicek, P. (2014). Functional annotation of noncoding sequence variants. Nat Methods, 11(3), 294–296. http://doi.org/10.1038/nmeth.2832
  Java GPL-3.0 0 0 0 0 Updated Aug 16, 2016

• chipseqknime

  KNIME workflow for ChIP-Seq http://charite.github.io/chipseqknime/
  CSS 0 0 0 0 Updated Mar 29, 2016

• jannovar_tutorial

  Jannovar Tutorial Applications
  Java 1 1 2 1 Updated May 27, 2015

• jannovar_example_app

  Minimal Maven application using Jannovar
  Java 0 1 0 0 Updated May 26, 2015

• denovocaller

  Denovo Variation Caller for simple familie trios (mother, father, affected child)
  Java GPL-3.0 0 2 0 0 Updated Jan 16, 2015

• ngspipeline

  Our NGS Pipeline using Nextflow
  BSD-3-Clause 3 7 0 0 Updated Dec 9, 2014