@charite

Computational Biology Charité Berlin

CBCB - Computational Biology Group at Charité Berlin

  • Java library for annotating VCF files with gene/transcript-based annotations

    bioinformatics vcf variant-annotation variant-filtration

    Java 16 16 Updated Feb 13, 2017
  • Q ChIP-seq peak caller

    C++ 13 3 Updated Feb 9, 2017
  • Charité Computational Biology Website

    CSS 3 6 Updated Feb 6, 2017
  • Java 3 1 Updated Dec 14, 2016
  • Phenotypic analysis of microdeletions and toplogical chromosome domain boundaries

    Python 1 3 Updated Oct 6, 2016
  • Weka implementation of the GWAVA method from Ritchie, G. R. S., Dunham, I., Zeggini, E., & Flicek, P. (2014). Functional annotation of noncoding sequence variants. Nat Methods, 11(3), 294–296. http://doi.org/10.1038/nmeth.2832

    Java Updated Aug 16, 2016
  • Weka implementation of hyperSMURF using EasyEnsemble and SMOTE

    Java 1 Updated Aug 16, 2016
  • Exonic Splicing Enhancer Analysis tool

    Java Updated Jun 3, 2016
  • KNIME workflow for ChIP-Seq http://charite.github.io/chipseqknime/

    CSS Updated Mar 29, 2016
  • Jannovar Tutorial Applications

    Java 1 1 Updated May 27, 2015
  • Minimal Maven application using Jannovar

    Java 1 Updated May 26, 2015
  • Denovo Variation Caller for simple familie trios (mother, father, affected child)

    Java 1 Updated Jan 16, 2015
  • Our NGS Pipeline using Nextflow

    4 3 Updated Dec 9, 2014