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README.md

Build Status Documentation API Docs Install with Bioconda Codacy Badge

Jannovar

Functional variant file annotation in Java. Jannovar provides a program for the annotation of VCF files and also exposes its functionality through a library API.

Also see the Quickstart section in the Jannovar manual.

In Brief

  • Language/Platform: Java >=8
  • License: BSD 3-Clause
  • Version: 0.34
  • Availability:
    • Java command line tool jannovar-cli
    • Java libraries exposing most of jannovar-cli's functionality.

Developer Guidelines

Style

  • Java code should follow IntelliJ default formatting and the Ctrl+Alt+l formatter. Eclipse users please use Eclipse Code Formatter. Enable the "wrap at right margin" option for JavaDoc.
  • For all other text, use .editorconfig.
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