Annotation of VCF variants with functional impact and from databases (executable+library)
Java HTML ANTLR Python Makefile Batchfile
Clone or download
Latest commit 2b91917 Feb 26, 2018

Build Status Documentation API Docs Install with Bioconda Codacy Badge


Functional variant file annotation in Java. Jannovar provides a program for the annotation of VCF files and also exposes its functionality through a library API.

Also see the Quickstart section in the Jannovar manual.

In Brief

  • Language/Platform: Java >=8
  • License: BSD 3-Clause
  • Version: 0.24
  • Availability:
    • Java command line tool jannovar-cli
    • Java libraries exposing most of jannovar-cli's functionality.