Annotation of VCF variants with functional impact and from databases (executable+library)
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Functional variant file annotation in Java. Jannovar provides a program for the annotation of VCF files and also exposes its functionality through a library API.

Also see the Quickstart section in the Jannovar manual.

In Brief

  • Language/Platform: Java >=8
  • License: BSD 3-Clause
  • Version: 0.25
  • Availability:
    • Java command line tool jannovar-cli
    • Java libraries exposing most of jannovar-cli's functionality.